Cohort Pathway is defined as the process of generating an aggregated sequence of transitions between the Event Cohorts among those people in the Target Cohorts. CohortPathways is a R package that given a set of instantiated target and event cohorts, calculates such sequence of transitions.
- Calculate aggregate sequence of transitions between the Event Cohorts among those people in the Target Cohorts.
The core implementation of CohortPathway analysis was developed by Christopher Knoll (github: chrisknoll), and enhanced by members of the OHDSI community: mick-iqvia (github), Odysseus Inc., and many other collaborators on the OHDSI/WebAPI team.
CohortPathways is an R package.
Requires R (version 3.6.0 or higher).
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See the instructions here for configuring your R environment, including RTools and Java.
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In R, use the following commands to download and install CohortPathways:
install.packages("remotes")
remotes::install_github("ohdsi/CohortPathways")Documentation can be found on the package website.
PDF versions of the documentation are also available:
- Package manual: CohortPathways.pdf
- Developer questions/comments/feedback: OHDSI Forum
- We use the GitHub issue tracker for all bugs/issues/enhancements
Read here how you can contribute to this package.
CohortPathways is licensed under Apache License 2.0
CohortPathways is being developed in R Studio.
CohortPathways is under development.