From 8d7927b033c5ba54d12e2145a93f899c7c668d74 Mon Sep 17 00:00:00 2001 From: Chetan Gohil Date: Wed, 14 Feb 2024 19:46:12 +0000 Subject: [PATCH] Use same standard brain as Matlab OSL. --- osl/source_recon/rhino/utils.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/osl/source_recon/rhino/utils.py b/osl/source_recon/rhino/utils.py index ee6f53c7..dd36881a 100644 --- a/osl/source_recon/rhino/utils.py +++ b/osl/source_recon/rhino/utils.py @@ -80,7 +80,7 @@ def get_rhino_files(subjects_dir, subject): "bet_outskin_plus_nose_mesh_file": op.join(surfaces_dir, "outskin_plus_nose_mesh.nii.gz"), "bet_inskull_mesh_file": op.join(surfaces_dir, "inskull_mesh.nii.gz"), "bet_outskull_mesh_file": op.join(surfaces_dir, "outskull_mesh.nii.gz"), - "std_brain": op.join(os.environ["FSLDIR"], "data", "standard", "MNI152_T1_1mm_brain.nii.gz"), + "std_brain": op.join(os.environ["FSLDIR"], "data", "standard", "MNI152_T1_1mm.nii.gz"), "std_brain_bigfov": op.join(os.environ["FSLDIR"], "data", "standard", "MNI152_T1_1mm_BigFoV_facemask.nii.gz"), "completed": op.join(surfaces_dir, "completed.txt"), } @@ -119,7 +119,7 @@ def get_rhino_files(subjects_dir, subject): "bet_outskin_plus_nose_mesh_file": op.join(coreg_dir, "scaled_outskin_plus_nose_mesh.nii.gz"), "bet_inskull_mesh_file": op.join(coreg_dir, "scaled_inskull_mesh.nii.gz"), "bet_outskull_mesh_file": op.join(coreg_dir, "scaled_outskull_mesh.nii.gz"), - "std_brain": op.join(os.environ["FSLDIR"], "data", "standard", "MNI152_T1_1mm_brain.nii.gz"), + "std_brain": op.join(os.environ["FSLDIR"], "data", "standard", "MNI152_T1_1mm.nii.gz"), } # All RHINO files