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Update docs for Casanovo-DB#404

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VarunAnanth2003 wants to merge 9 commits intodevNoble-Lab/casanovo:devfrom update-docsNoble-Lab/casanovo:update-docsCopy head branch name to clipboard

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Commits on Nov 20, 2024

• Update getting_started.md

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• Update cli.rst

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• Update getting_started.md

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• Update file_formats.md

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• add sample data and update getting_started

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• Generate new screengrabs with rich-codex

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• Fix incorrect image in getting_started.md

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• Generate new screengrabs with rich-codex

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Commits on Nov 27, 2024

• fixed getting_started and pruned mouse fasta

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