Restrict NumPy to pre-2.0 #344
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #344 +/- ##
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Coverage 89.77% 89.77%
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Files 12 12
Lines 929 929
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Hits 834 834
Misses 95 95 ☔ View full report in Codecov by Sentry. |
Lilferrit
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* Restrict NumPy to pre-2.0 * Update changelog
bittremieux
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Lilferrit
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* prediction output in model eval mode * eliminate eval command, introduce -e flag for predict command * adapted unit test to new model runner and model functionality * updated documentation * removed log and result files * Generate new screengrabs with rich-codex * Update paper reference (#361) * Bug report template (#360) * bug report template * punctuation, hardware description item * Restrict NumPy to pre-2.0 (#344) * Restrict NumPy to pre-2.0 * Update changelog * Update paper reference (#361) --------- Co-authored-by: Lilferrit <straub.gavin@gmail.com> * upgrade codecove to v4 (#364) * implemen eval mode at model runner level, fix unit test * CLI documentation * Generate new screengrabs with rich-codex * requested changes * Generate new screengrabs with rich-codex * evaluation test cases * file warnings, evaluation tests * fixed ubuntu specific test case bug * verify annotated mgf files * verify annotated mgf files * Generate new screengrabs with rich-codex * Save best model (#365) * save best model * save best model * updated unit tests * remove save top k config item * added save_top_k to deprecated config options * changelog entry * test case, formatting * requested changes * prediction output in model eval mode * eliminate eval command, introduce -e flag for predict command * adapted unit test to new model runner and model functionality * updated documentation * removed log and result files * implemen eval mode at model runner level, fix unit test * CLI documentation * Bug report template (#360) * bug report template * punctuation, hardware description item * Restrict NumPy to pre-2.0 (#344) * Restrict NumPy to pre-2.0 * Update changelog * Update paper reference (#361) --------- Co-authored-by: Lilferrit <straub.gavin@gmail.com> * requested changes * evaluation test cases * file warnings, evaluation tests * fixed ubuntu specific test case bug * verify annotated mgf files * AnnotatedSpectrumIndex type error * requested changes, changelog entry --------- Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com> Co-authored-by: Wout Bittremieux <bittremieux@users.noreply.github.com>
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Fixes #339.
Hotfix until NumPy v2.0 will be supported after the DepthCharge upgrade.