Code

Updating iSEEnrich & iSEEinit#10

Code

Merged

NajlaAbassi merged 22 commits intodevelNajlaAbassi/iSEEfier:develfrom updating_iSEEnrich&iSEEinitNajlaAbassi/iSEEfier:updating_iSEEnrich&iSEEinitCopy head branch name to clipboardOct 4, 2024

+365-86

Commits

Commits on Sep 19, 2024

• add a couple of param in iSEEnrich to accomodate more plots for visualization

  NajlaAbassi

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• add tests

  NajlaAbassi

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• update vignette with the new iSEEnrich

  NajlaAbassi

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Commits on Sep 20, 2024

• update vignette

  NajlaAbassi

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• less dependencies, just to make the code more uniform

  NajlaAbassi

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• iSEEinit() now accecpts features as a vector, a list or dataframe!

  NajlaAbassi

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• check for feature type

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Commits on Sep 23, 2024

• updating iSEEinit to accept features as character vector, list or dataframe

  NajlaAbassi

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• updating vignette

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Commits on Sep 25, 2024

• update the iSEEnrich example

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Commits on Sep 26, 2024

• while at it, trying to fix the GHA for the linux system

  federicomarini

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Commits on Sep 30, 2024

• removing the list option in as input

  NajlaAbassi

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• new parameter in, it corresponds to the genes column name when features is df

  NajlaAbassi

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• adding some tests for the new gene_id param

  NajlaAbassi

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• add some checks for the reddim_type, clusters and groups

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• updating vignette

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• fixing the call position for gene_id

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• adding a couple of test for iSEEnrich

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Commits on Oct 2, 2024

• adding some additional statements to catch the messages - it is optional but leads to a cleaner console output/a full catching round

  federicomarini

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• Merge branch 'updating_iSEEnrich&iSEEinit' of github.com:NajlaAbassi/iSEEfier into updating_iSEEnrich&iSEEinit

  federicomarini

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Commits on Oct 4, 2024

• update package version

  NajlaAbassi

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• update news to include main changes in the package

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