Reauthor commits#70

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thomaswmorris wants to merge 391 commits intoNSLS-II:mainfrom thomaswmorris:reauthor-commits

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Commits on May 2, 2023

fixed syntax in tests
thomaswmorris
committed

Commits on May 3, 2023

forgot to initialize the agent
thomaswmorris
committed

Commits on May 4, 2023

optimizer for acquisition functions
thomaswmorris
committed

Commits on May 8, 2023

tuning
thomaswmorris
committed
kick off at ISS
thomaswmorris
committed
fixup! kick off at ISS

thomaswmorris
authored and
estavitski
committed

Commits on May 11, 2023

Commits on May 15, 2023

some work
thomaswmorris
committed

Commits on May 16, 2023

fixed botorch acquisition
thomaswmorris
committed

Commits on May 17, 2023

Commits on May 22, 2023

address review
thomaswmorris
committed

Commits on May 23, 2023

Commits on May 24, 2023

Commits on Jun 1, 2023

DOC: clean up incomplete notebook
mrakitin
committed
Merge pull request NSLS-II#32 from thomaswmorris/syntax
mrakitin
authored
Issues discovered at ISS

mrakitin
authored and
estavitski
committed

Commits on Jun 6, 2023

Merge pull request NSLS-II#34 from NSLS-II/iss-20230601
AbbyGi
authored

Commits on Jun 21, 2023

pulled from main
thomaswmorris
committed

Commits on Jun 29, 2023

Commits on Jun 30, 2023

Commits on Jul 12, 2023

tweaks
thomaswmorris
committed

Commits on Jul 13, 2023

Commits on Jul 15, 2023

specify which dims are latent in the kernel
thomaswmorris
committed

Commits on Jul 16, 2023

Commits on Jul 17, 2023

cleaner output
thomaswmorris
committed

Commits on Jul 18, 2023

load saved hyperparameters on initialization
thomaswmorris
committed

Commits on Aug 8, 2023

Commits on Aug 10, 2023

Commits on Aug 11, 2023

Commits on Sep 5, 2023

added constrained acquisition functions
Thomas Morris
committed
added more acquisition functions
Thomas Morris
committed
added sirepo-bluesky to deps
Thomas Morris
committed
fixed tests
thomaswmorris
committed
choosing acquisition functions
Thomas Morris
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fix deps
Thomas Morris
committed
do not test in the docs
Thomas Morris
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not all tasks need to be valid
Thomas Morris
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not a syntax error but go off i guess
Thomas Morris
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remove sirepo-bluesky dependency
Thomas Morris
committed
fix deps
Thomas Morris
committed

Commits on Sep 6, 2023

conda install srwpy to build docs
thomaswmorris
committed
conda install srwpy to build docs
thomaswmorris
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sirepo-bluesky in dev requirements
Thomas Morris
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tests
Thomas Morris
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deps
Thomas Morris
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apply the minus sign AFTER the logarithm
Thomas Morris
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work at ATF
thomaswmorris
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Commits on Sep 7, 2023

use device name for dofs
Thomas Morris
committed
optional trigger delay on default acquisition plan
thomaswmorris
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tweaks
Thomas Morris
committed

Commits on Sep 11, 2023

tweak CI
Thomas Morris
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use native python in CI
Thomas Morris
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no sirepo in CI for now
Thomas Morris
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no sirepo in CI for now
Thomas Morris
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Commits on Sep 12, 2023

some plots work
Thomas Morris
committed

Commits on Sep 13, 2023

plot work
Thomas Morris
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merge
Thomas Morris
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Commits on Sep 14, 2023

able to specify which dimensions to treat as latent
Thomas Morris
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old plots
Thomas Morris
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Commits on Sep 21, 2023

iss tweaks
Thomas Morris
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fix routing bug
Thomas Morris
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actually fix routing bug
Thomas Morris
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wrong dimensiongit add .
Thomas Morris
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Commits on Sep 22, 2023

why did we get rid of acquisition plots???
Thomas Morris
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Commits on Sep 25, 2023

tweaks
Thomas Morris
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Merge pull request #2 from thomaswmorris/specify-latent-dims
thomaswmorris
authored
all dofs if no tags
Thomas Morris
committed
CI: install packages via built-in system Python (not conda)
mrakitin
committed
Merge pull request #3 from mrakitin/improve-ci
thomaswmorris
authored
beam image parser
Thomas Morris
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Merge branch 'hypervolume' of github.com:thomaswmorris/bloptools into hypervolume
Thomas Morris
committed
beam image parser bug
Thomas Morris
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better parser
Thomas Morris
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Commits on Sep 26, 2023

detach tensors before plotting
Thomas Morris
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add .numpy()
Thomas Morris
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Commits on Sep 29, 2023

Commits on Oct 2, 2023

adjust test for new syntax
Thomas Morris
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fixed docs for new syntax
Thomas Morris
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add acquisition config to MANIFEST.in
Thomas Morris
committed

Commits on Oct 24, 2023

Merge pull request NSLS-II#48 from thomaswmorris/monte-carlo
mrakitin
authored
fixed bug in computed constraint shape in acquisition functions
Thomas Morris
committed
added grid scan as initialization plan

thomaswmorris
authored and
Thomas Morris
committed
added class representations for DOFs and objectives

thomaswmorris
authored and
Thomas Morris
committed
make sure DOF bounds are cast to floats
Thomas Morris
committed
move test functions to utils
Thomas Morris
committed
work at ATF on Oct 12
thomaswmorris
committed
fixed shapes in grid plots
Thomas Morris
committed
update syntax in notebooks
Thomas Morris
committed
better verbose output for agent.ask()
Thomas Morris
committed
fixed bug in computed constraint shape in acquisition functions
Thomas Morris
committed
added grid scan as initialization plan

thomaswmorris
authored and
Thomas Morris
committed
added class representations for DOFs and objectives

thomaswmorris
authored and
Thomas Morris
committed
make sure DOF bounds are cast to floats
Thomas Morris
committed
move test functions to utils
Thomas Morris
committed
work at ATF on Oct 12
thomaswmorris
committed
fixed shapes in grid plots
Thomas Morris
committed
update syntax in notebooks
Thomas Morris
committed
better verbose output for agent.ask()
Thomas Morris
committed
parametrize acquisition function tests
Thomas Morris
committed
clean up after rebasing
Thomas Morris
committed
fixed tutorial notebooks
Thomas Morris
committed

Commits on Oct 28, 2023

fixed multi-objective acquisition functions
Thomas Morris
committed
access table by device name and not dof name
Thomas Morris
committed

Commits on Oct 30, 2023

fixed docs and added more prereqs
thomaswmorris
committed

Commits on Nov 4, 2023

added a whole bunch of docstrings (and other tweaks)
Thomas Morris
committed
change typing syntax for python <3.10
Thomas Morris
committed
fix dev requirements
Thomas Morris
committed

Commits on Nov 8, 2023

Merge pull request NSLS-II#49 from thomaswmorris/objectify
thomaswmorris
authored
added targeting capability to agent objectives
Thomas Morris
committed
work at xpd

XPD Operator
authored and
Thomas Morris
committed
update syntax in tests
Thomas Morris
committed
fix bug in learn method
Thomas Morris
committed
added targeting posterior transform
Thomas Morris
committed
REL: v0.5.0
mrakitin
authored

Commits on Nov 9, 2023

als tweaks
thomaswmorris
committed

Commits on Nov 10, 2023

better targeting method
Thomas Morris
committed
make objectives toggleable
Thomas Morris
committed

Commits on Nov 20, 2023

wrap up als work
thomaswmorris
committed
apply pre-commit
Thomas Morris
committed

Commits on Nov 28, 2023

syntax for .tell() method is more flexible
Thomas Morris
committed
remove stray notebooks
Thomas Morris
committed
fix .reset() method
Thomas Morris
committed

Commits on Jan 6, 2024

addressed PR review
Thomas Morris
committed
fixed notebooks
Thomas Morris
committed

Commits on Jan 7, 2024

last PR tweaks
Thomas Morris
committed
remove notebook
Thomas Morris
committed
Merge pull request NSLS-II#52 from thomaswmorris/targeting
thomaswmorris
authored

Commits on Jan 8, 2024

added napari viewer to agent
Thomas Morris
committed
shorten name to blop
thomaswmorris
authored
rename directory
thomaswmorris
authored
improve test coverage
Thomas Morris
committed
Merge branch 'main' of github.com:thomaswmorris/blop
Thomas Morris
committed
Merge branch 'main' into napari
Thomas Morris
committed

Commits on Jan 12, 2024

sirepo-bluesky patch
thomaswmorris
committed
better controls for dofs and objs
Thomas Morris
committed

Commits on Jan 18, 2024

add docstrings
thomaswmorris
committed
fixed read-only DOFs
Thomas Morris
committed

Commits on Jan 23, 2024

add log transform for DOFs
Thomas Morris
committed
finish log transformed dofs
Thomas Morris
committed

Commits on Jan 26, 2024

better subsetter for dofs and objs
Thomas Morris
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method for active dofs and objs
Thomas Morris
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Commits on Jan 30, 2024

model outcome constraints for targeted objectives
Thomas Morris
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fix writing hyperparameters
Thomas Morris
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fix docs
Thomas Morris
committed
update models on tell is optional
Thomas Morris
committed
exclude invalid inputs from validity constraint
Thomas Morris
committed
Update blop/dofs.py

thomaswmorris
and
mrakitin
authored
Update blop/objectives.py

thomaswmorris
and
mrakitin
authored
Update release-history.rst
thomaswmorris
authored
Merge pull request NSLS-II#57 from thomaswmorris/friendly-dofs-and-objs
thomaswmorris
authored

Commits on Feb 3, 2024

REL: v0.6.0
Thomas Morris
committed
REL: v0.6.1
Thomas Morris
committed

Commits on Apr 3, 2024

add discrete DOFs
Thomas Morris
committed

Commits on Apr 11, 2024

add discrete DOFs to docs
Thomas Morris
committed

Commits on Apr 17, 2024

fixes from PR review
Thomas Morris
committed
do not track version
Thomas Morris
committed
Merge pull request NSLS-II#64 from thomaswmorris/discrete
mrakitin
authored
add pareto functionality
Thomas Morris
committed
fixed a broken method
Thomas Morris
committed
tests pass now
Thomas Morris
committed

Commits on Apr 18, 2024

added pareto example to the docs
Thomas Morris
committed
Apply suggestions from code review

thomaswmorris
and
mrakitin
authored
Merge pull request NSLS-II#65 from thomaswmorris/pareto
thomaswmorris
authored
better control of DOFs and objectives
Thomas Morris
committed
saving changes
Thomas Morris
committed
fixed numerical issues in constraints
Thomas Morris
committed
rebased on main
Thomas Morris
committed
pre-commit
Thomas Morris
committed

Commits on Apr 21, 2024

better error checking for dofs
Thomas Morris
committed
assume DOF type for read-only DOFs
Thomas Morris
committed

Commits on Apr 23, 2024

fixes from PR feedback
Thomas Morris
committed
Merge pull request NSLS-II#66 from thomaswmorris/improve-dofs-and-objs
thomaswmorris
authored
better control of DOFs and objectives
Thomas Morris
committed
saving
Thomas Morris
committed
fix acqf plots
Thomas Morris
committed
fix bugs after rebasing
Thomas Morris
committed
reconfigure digestion syntax
Thomas Morris
committed
rebased on main
Thomas Morris
committed

Commits on Apr 24, 2024

better test coverage
Thomas Morris
committed

Commits on Apr 26, 2024

make data types more robust
Thomas Morris
committed

Commits on Apr 30, 2024

fix docs bug
Thomas Morris
committed

Commits on May 2, 2024

add labels to points returned by .ask()
Thomas Morris
committed

Commits on May 10, 2024

apply suggestions from PR review
Thomas Morris
committed
Merge pull request NSLS-II#68 from thomaswmorris/acquisition
thomaswmorris
authored
quick patch
Thomas Morris
committed

Commits on May 13, 2024

remove zict as a dependency
Thomas Morris
committed
REL: v0.7.0
Thomas Morris
committed