v1.13.0-alpha.2

Full Changelog: v1.13.0-alpha.1...v1.13.0-alpha.2

v1.13.0-alpha.1

Full Changelog: v1.13.0-alpha...v1.13.0-alpha.1

v1.13.0-alpha

• Builds the converter image so that we can pull it instead of build it

Full Changelog: v1.12.0...v1.13.0-alpha

v1.12.0

• Conversion ZARR to TIFF: write TIFF with extra metadata for (handling of > 3 channels in) cellprofiler/imagej

Full Changelog: v1.11.0...v1.12.0

v1.11.0

• Bump for updated scripts v1.11.0
  • Improved CSV handling and description tooltips for all workflows.

Full Changelog: v1.10.0...v1.11.0

v1.10.0

• Bump for updated scripts v1.10.0

Full Changelog: v1.9.1...v1.10.0

v1.9.1

• Fix a breaking bug in the init method, introduced with escaping folder names. Should be able to setup new workflows again w/ v1.9.1.

Full Changelog: v1.9.0...v1.9.1

v1.9.0

What's Changed

• Fixed handling of OMERO datasets/folders with spaces in the name: #12
• Fixed handling of a GIT repo for (job) scripts #11
• changed target folder for slurm-config.ini in description by @jo-mueller in #10

New Contributors

• @jo-mueller made their first contribution in #10

Full Changelog: v1.8.0...v1.9.0

v1.8.0

• Cleanup after conversion too
• Don't copy metadata from original images anymore (it copied datatype too)

Full Changelog: v1.7.1...v1.8.0

v1.7.1

Fix bugs:

• Slurm job now stops complaining about missing Singularity
• CANCELLED+ state of job array is now handled properly (if you cancel a job array...)
• Cleanup now also removes the large amount of converter logs made by the job array
• Reduced DEBUG logging of imported modules from OMERO and Paramiko
• Fixed a printing bug in the minimal slurm script
• Turned more BIOMERO-scripts print statements into logger statements

Full Changelog: v1.7.0...v1.7.1