Oops, escape individual folders. Breaking bug for creating dirs.

NL-BioImaging · May 22, 2024 · 61fb3af · 61fb3af
1 parent 3739180
commit 61fb3af
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/biomero/slurm_client.py b/biomero/slurm_client.py
@@ -433,7 +433,7 @@ def setup_container_images(self):
         # Create specific workflow dirs
         with self.cd(self.slurm_images_path):
             if self.slurm_model_paths:
-                modelpaths = " ".join(self.slurm_model_paths.values())
+                modelpaths = "\" \"".join(self.slurm_model_paths.values())
                 # mkdir cellprofiler imagej ...
                 r = self.run_commands([f"mkdir -p \"{modelpaths}\""])
                 if not r.ok: