From 5f8423a4257675960c4ab96c3ff2eb148b1714b3 Mon Sep 17 00:00:00 2001 From: Luik Date: Wed, 17 Jul 2024 16:40:22 +0200 Subject: [PATCH] Bump to BIOMERO version 1.13.0 --- Example_Minimal_Slurm_Script.py | 2 +- data/SLURM_Get_Results.py | 2 +- data/SLURM_Get_Update.py | 2 +- data/SLURM_Remote_Conversion.py | 2 +- data/_SLURM_Image_Transfer.py | 2 +- init/SLURM_Init_environment.py | 2 +- init/SLURM_check_setup.py | 2 +- workflows/SLURM_CellPose_Segmentation.py | 2 +- workflows/SLURM_Run_Workflow.py | 2 +- workflows/SLURM_Run_Workflow_Batched.py | 2 +- 10 files changed, 10 insertions(+), 10 deletions(-) diff --git a/Example_Minimal_Slurm_Script.py b/Example_Minimal_Slurm_Script.py index 6b57892..c724085 100644 --- a/Example_Minimal_Slurm_Script.py +++ b/Example_Minimal_Slurm_Script.py @@ -41,7 +41,7 @@ def runScript(): params = JobParams() params.authors = ["Torec Luik"] - params.version = "1.12.0" + params.version = "1.13.0" params.description = f'''Example script to run on slurm cluster Runs a script remotely on SLURM. diff --git a/data/SLURM_Get_Results.py b/data/SLURM_Get_Results.py index 3b0b8f6..68ac2e7 100644 --- a/data/SLURM_Get_Results.py +++ b/data/SLURM_Get_Results.py @@ -774,7 +774,7 @@ def runScript(): namespaces=[omero.constants.namespaces.NSDYNAMIC], - version="1.12.0", + version="1.13.0", authors=["Torec Luik"], institutions=["Amsterdam UMC"], contact='cellularimaging@amsterdamumc.nl', diff --git a/data/SLURM_Get_Update.py b/data/SLURM_Get_Update.py index f9c5f72..d639f42 100644 --- a/data/SLURM_Get_Update.py +++ b/data/SLURM_Get_Update.py @@ -78,7 +78,7 @@ def runScript(): description="Project to attach workflow results to", values=_projects), namespaces=[omero.constants.namespaces.NSDYNAMIC], - version="1.12.0", + version="1.13.0", authors=["Torec Luik"], institutions=["Amsterdam UMC"], contact='cellularimaging@amsterdamumc.nl', diff --git a/data/SLURM_Remote_Conversion.py b/data/SLURM_Remote_Conversion.py index e4dc9b6..86be2ef 100644 --- a/data/SLURM_Remote_Conversion.py +++ b/data/SLURM_Remote_Conversion.py @@ -72,7 +72,7 @@ def runScript(): description=cleanup_descr, default=True), namespaces=[omero.constants.namespaces.NSDYNAMIC], - version="1.9.1", + version="1.13.0", authors=["Torec Luik"], institutions=["Amsterdam UMC"], contact='cellularimaging@amsterdamumc.nl', diff --git a/data/_SLURM_Image_Transfer.py b/data/_SLURM_Image_Transfer.py index 71a1616..cc0ebd8 100644 --- a/data/_SLURM_Image_Transfer.py +++ b/data/_SLURM_Image_Transfer.py @@ -704,7 +704,7 @@ def run_script(): description="Name of folder (and zip file) to store images. Don't use spaces!", default=constants.transfer.FOLDER_DEFAULT+str(int(datetime.now().timestamp()))), - version="1.12.0", + version="1.13.0", authors=["Torec Luik", "William Moore", "OME Team"], institutions=["Amsterdam UMC", "University of Dundee"], contact='cellularimaging@amsterdamumc.nl', diff --git a/init/SLURM_Init_environment.py b/init/SLURM_Init_environment.py index bba0eed..7b10926 100644 --- a/init/SLURM_Init_environment.py +++ b/init/SLURM_Init_environment.py @@ -41,7 +41,7 @@ def runScript(): scripts.String(extra_config_name, optional=True, grouping="01.1", description="The path to your configuration file on the server. Optional."), namespaces=[omero.constants.namespaces.NSDYNAMIC], - version="1.12.0", + version="1.13.0", authors=["Torec Luik"], institutions=["Amsterdam UMC"], contact='cellularimaging@amsterdamumc.nl', diff --git a/init/SLURM_check_setup.py b/init/SLURM_check_setup.py index ad07dc7..8621baf 100644 --- a/init/SLURM_check_setup.py +++ b/init/SLURM_check_setup.py @@ -32,7 +32,7 @@ def runScript(): '''Check Slurm setup, e.g. available workflows. ''', namespaces=[omero.constants.namespaces.NSDYNAMIC], - version="1.12.0", + version="1.13.0", authors=["Torec Luik"], institutions=["Amsterdam UMC"], contact='cellularimaging@amsterdamumc.nl', diff --git a/workflows/SLURM_CellPose_Segmentation.py b/workflows/SLURM_CellPose_Segmentation.py index d25923a..906781d 100644 --- a/workflows/SLURM_CellPose_Segmentation.py +++ b/workflows/SLURM_CellPose_Segmentation.py @@ -39,7 +39,7 @@ def runScript(): params = JobParams() params.authors = ["Torec Luik"] - params.version = "1.12.0" + params.version = "1.13.0" params.description = f'''Script to run CellPose on slurm cluster. First run the {constants.IMAGE_EXPORT_SCRIPT} script to export your data to the cluster. diff --git a/workflows/SLURM_Run_Workflow.py b/workflows/SLURM_Run_Workflow.py index e139af0..bfbf579 100644 --- a/workflows/SLURM_Run_Workflow.py +++ b/workflows/SLURM_Run_Workflow.py @@ -56,7 +56,7 @@ def runScript(): # and populated with the currently selected Image(s)/Dataset(s) params = JobParams() params.authors = ["Torec Luik"] - params.version = "1.12.0" + params.version = "1.13.0" params.description = f'''Script to run a workflow on the Slurm cluster. This runs a script remotely on your Slurm cluster. diff --git a/workflows/SLURM_Run_Workflow_Batched.py b/workflows/SLURM_Run_Workflow_Batched.py index 6c28d8f..f484767 100644 --- a/workflows/SLURM_Run_Workflow_Batched.py +++ b/workflows/SLURM_Run_Workflow_Batched.py @@ -58,7 +58,7 @@ def runScript(): # and populated with the currently selected Image(s)/Dataset(s) params = JobParams() params.authors = ["Torec Luik"] - params.version = "1.12.0" + params.version = "1.13.0" params.description = f'''Script to run workflows on slurm cluster, in batches.