Merge pull request #416 from NCI-GDC/feat/SV-1089-sur-read-pair-num

SV-1089: read pair num to submitted unaligned
NCI-GDC · Apr 26, 2018 · 2f31326 · 2f31326
2 parents 3724dcf + b6f4a90
commit 2f31326
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Showing 5 changed files with 9 additions and 9 deletions.
diff --git a/VERSION b/VERSION
@@ -1 +1 @@
-1.12.0
+1.12.1
diff --git a/gdcdictionary/examples/valid/read_group.json b/gdcdictionary/examples/valid/read_group.json
@@ -18,7 +18,6 @@
     "platform": "Illumina",
     "read_length": 75,
     "read_group_name": "205DD.3",
-    "read_pair_number": "R1",
     "sequencing_center": "BI",
     "sequencing_date": "2010-08-04",
     "target_capture_kit":"SureSelect Human All Exon v5",

diff --git a/gdcdictionary/examples/valid/submitted_unaligned_reads.json b/gdcdictionary/examples/valid/submitted_unaligned_reads.json
@@ -9,6 +9,7 @@
     "data_type": "Unaligned Reads",
     "data_format": "FASTQ",
     "experimental_strategy": "WGS",
+    "read_pair_number": "R1",
     "read_groups": {
 	"submitter_id": "read_group_1"
     }

diff --git a/gdcdictionary/schemas/read_group.yaml b/gdcdictionary/schemas/read_group.yaml
@@ -227,13 +227,6 @@ properties:
   read_length:
     type: integer
 
-  read_pair_number:
-    term:
-      $ref: "_terms.yaml#/read_pair_number"
-    enum:
-      - R1
-      - R2
-
   RIN:
     term:
       $ref: "_terms.yaml#/RIN"

diff --git a/gdcdictionary/schemas/submitted_unaligned_reads.yaml b/gdcdictionary/schemas/submitted_unaligned_reads.yaml
@@ -81,5 +81,12 @@ properties:
       - WGS
       - WXS
 
+  read_pair_number: 
+    term:
+      $ref: "_terms.yaml#/read_pair_number"
+    enum:
+      - R1
+      - R2
+
   read_groups:
     $ref: "_definitions.yaml#/to_one"