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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 242 84

  2. EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 16

  3. development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 222 106

  5. GAAS Public

    Genome Assembly and Annotation Service code

    Perl 211 47

  6. IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 321 repositories
  • raukr-2025 Public

    Raukr 2025 • NBIS Summer School • R Beyond the Basics

    SCSS 0 GPL-3.0 1 0 1 Updated Apr 26, 2025
  • ega-public-metadata Public

    Python code for interacting with the EGA public metadata API

    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 26, 2025
  • urdr Public

    Timelogging system of NBIS

    TypeScript 0 AGPL-3.0 1 57 1 Updated Apr 26, 2025
  • PLP_Design_Portal Public

    This repository contains a package to create padlock probes that target RNA directly and for developing a user-friendly.portal

    0 0 11 1 Updated Apr 25, 2025
  • vector-oligo-search Public
    Python 0 GPL-3.0 1 1 2 Updated Apr 25, 2025
  • workshop-epigenomics-RTDs Public

    workshop website on readthedocs

    19 15 0 1 Updated Apr 24, 2025
  • sda-cli Public

    User command line interface for the SDA

    Go 5 AGPL-3.0 1 46 2 Updated Apr 24, 2025
  • scQC Public

    Single cell QC analysis pipeline

    HTML 1 GPL-3.0 0 0 0 Updated Apr 24, 2025
  • Earth-Biogenome-Project-pilot Public

    An assembly workflow for analysing data in the Earth Biogenome Project pilot project.

    Nextflow 13 GPL-3.0 10 83 5 Updated Apr 24, 2025
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    Python 3 0 0 1 Updated Apr 23, 2025
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