Here is a repository that uses 'Shablona' as a template (https://github.com/uwescience/shablona). As a result, there are things in here we may not need and a few things that will need to be populated with the relevant info for this package.
- Git clone
- python setup.py develop.
- Scripts that drive everything are in /pRF_sim
- Notebooks are in /notebooks.
- I have included some data in /pRF_sim/data.
- A yaml file that can be used to define parameters is in /pRF_sim/data.
- prfpy_API_example: A minimal example of prfpy usage.
- Prepare_retinotopy_prior. Here I prepare a retinotopy 'prior' of prf estimates throughout the brain. This may be useful for simulations.
- stim.py Here, for convenience, I borrow a set of functions from 'popeye' for defining simple bar stimuli - for the purpose of an example. Functions for defining different design matrices could go here.
- utils.py. A set of utlitiies. Loads the package yaml into memory - as well as the Glasser cortical parcellaion and retinotopy prior.
- vis.py. A set of plotting functions that use pycortex.