Conda and Bioconda for bioinformatics tools: a short tutorial

This tutorial covers the basics of setting up the conda tool to install bioinformatics tools from Bioconda and producing "reproducible environments" as a foundation for your own analysis or pipeline. You don't need sudo.

• View the tutorial notebook.
• Or as slides

Requirements:

Just reading the Jupyter notebook right here on Github and cut'n'pasting into your terminal is probably all you need.

However, if you'd like to run this notebook on your computer, you will need:

• Jupyter Notebook (or JupyterLab)
• Jupyter Bash Kernel: https://github.com/takluyver/bash_kernel

If you've cloned the repository, to view the slides locally.

run_slides.h