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Copy pathMSPNmorph_12spine_long.xml
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MSPNmorph_12spine_long.xml
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<Morphology>
<!-- spine morphologies: width for sections along the spine -->
<SpineType id="spineA">
<Section width="0.2" at="0.0" regionClass="neck"/>
<Section width="0.2" at="0.2" regionClass="neck"/>
<Section width="0.2" at="0.3" regionClass="head"/>
<Section width="0.6" at="0.4" regionClass="head"/>
<Section width="0.6" at="0.5" regionClass="PSD"/>
<Section width="0.2" at="0.6" label="pointA"/>
</SpineType>
<!-- regionClass labels can apply to sections or segments and label regions for applying initial conditaions etc -->
<!-- lengthDensity means you set the number per micron along the segment -->
<SpineAllocation id="sa0" spineType="spineA" region="dend1" lengthDensity="1.0"/>
<SpineAllocation id="sa1" spineType="spineA" region="dend1a" lengthDensity="0.3"/>
<SpineAllocation id="sa2" spineType="spineA" region="dend2" lengthDensity="0.4"/>
<SpineAllocation id="sa3" spineType="spineA" region="dend3a" lengthDensity="1.5"/>
<SpineAllocation id="sa4" spineType="spineA" region="dend4" lengthDensity="0.7"/>
<SpineAllocation id="sa5" spineType="spineA" region="dend5" lengthDensity="1.2"/>
<SpineAllocation id="sa6" spineType="spineA" region="dend6" lengthDensity="0.7"/>
<SpineAllocation id="sa7" spineType="spineA" region="dend7a" lengthDensity="1.2"/>
<SpineAllocation id="sa8" spineType="spineA" region="dend8" lengthDensity="0.7"/>
<SpineAllocation id="sa9" spineType="spineA" region="dend9" lengthDensity="0.7"/>
<!--
<Segment id="seg1" region="region1">
<start x="1.0" y="1.0" z="0.0" r="0.3"/>
<end x="5.0" y="1.0" z="0.0" r="0.3"/>
</Segment>
-->
<Segment id="seg1" region="dend1">
<start x="0.0" y="1.0" z="0.0" r="0.3"/>
<end x="2.0" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg1a" region="dend1a">
<start on="seg1" at="end" />
<end x="3.0" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg2" region="dend2">
<start on="seg1a" at="end" />
<end x="4.75" y="1.0" z="0.0" r="0.3" label="pointB"/>
</Segment>
<Segment id="seg3a" region="dend3a">
<start on="seg2" at="end" />
<end x="6.75" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg3" region="dend3">
<start on="seg3a" at="end" />
<end x="7.75" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg4" region="dend4">
<start on="seg3" at="end" />
<end x="9.75" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg4a" region="dend4a">
<start on="seg4" at="end" />
<end x="10.75" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg5" region="dend5">
<start on="seg4a" at="end" />
<end x="12.5" y="1.0" z="0.0" r="0.3" label="pointC"/>
</Segment>
<Segment id="seg6a" region="dend6a">
<start on="seg5" at="end" />
<end x="13.5" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg6" region="dend6">
<start on="seg6a" at="end" />
<end x="15.5" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg7" region="dend7">
<start on="seg6" at="end" />
<end x="16.5" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg7a" region="dend7a">
<start on="seg7" at="end" />
<end x="18.5" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg8" region="dend8">
<start on="seg7a" at="end" />
<end x="20.25" y="1.0" z="0.0" r="0.3" label="pointD"/>
</Segment>
<Segment id="seg9a" region="dend9a">
<start on="seg8" at="end" />
<end x="21.25" y="1.0" z="0.0" r="0.3"/>
</Segment>
<Segment id="seg9" region="dend9">
<start on="seg9a" at="end" />
<end x="23.25" y="1.0" z="0.0" r="0.3"/>
</Segment>
</Morphology>