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<html><head>
<script language="JavaScript" type="text/javascript" src="index_files/burstscript"></script>
<meta name="Author" content="Victor Matveev">
<meta name="description" content="Calcium Calculator example script files">
<meta name="Keywords" content="Calcium Calculator, scripts, CalC, download, calcium diffusion, calcium buffering">
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"><title>MATLAB code for manuscript "Capturing the bursting dynamics..." (2007) Matveev, Bose, Nadim</title>
<!-- base href="http://web.njit.edu/~matveev/Burst/" --><!-- ===============================================================================
B O D Y
=============================================================================== --></head>
<body>
<script language="JavaScript" type="text/javascript">
makeTitle("MATLAB code for multistable anti-phase bursting");
</script><table width="580"><tbody><tr><td class="title" colspan="6" align="center" height="32" width="100%">MATLAB code for multistable anti-phase bursting</td></tr><tr><td class="TCALC"><a class="TMENU" href="http://web.njit.edu/%7Ematveev/" target="_top"> Matveev </a></td> <td class="TCALC"><a class="TMENU" href="http://m.njit.edu/%7Ebose/" target="_top"> Bose </a></td> <td class="TCALC"><a class="TMENU" href="http://stg.rutgers.edu/farzan/index.htm" target="_top"> Nadim </a></td> <td class="TMENU"><a class="TMENU" href="http://math.njit.edu/" target="_top"> Math Sci </a></td> <td class="TNJIT"><a class="TMENU" href="http://www.njit.edu/" target="_top"> <b>NJIT</b> </a></td> <td class="TMENU"><a class="TMENU" href="http://newarkbiosci.rutgers.edu/" target="_top"> Bio Sci </a></td> </tr></tbody></table><br>
<br>
<!-- b><font color=maroon>[[ Under Construction ]]</font></b><br><br -->
<!--font color=maroon>Under construction</font><br><br><br-->
The MATLAB scripts posted below reproduce the simulation results corresponding
to Figs. 1, 10 and 11 of the manuscript:<br><br>
<table border="1" cellpadding="3"><tbody><tr><td class="COLOR" align="center">
Victor Matveev, Amitabha Bose, Farzan Nadim<br>
<b>Capturing the bursting dynamics of a two-cell inhibitory network using a
one-dimensional map</b> (2007)<br>
Journal of Computational Neuroscience, <b>23</b>: 169.
<a href="http://www.springerlink.com/content/t4v879k50364471u/">[ Full Text ]</a>
<!-- a href="http://jn.physiology.org/cgi/reprint/00101.2006v1">[ PDF ]</a><br -->
</td></tr></tbody></table>
<br>
Please place all files in the same directory before running the main simulation script <b>MultiMovie.m</b>
<br><br>
<hr>
<br>
<!-- ===============================================================================
MAIN TABLE
=============================================================================== -->
<table cellpadding="2" width="600">
<tbody><tr><td valign="top">
<font color="red">♦</font> <a href="http://web.njit.edu/%7Ematveev/Burst/MultiMovie.m" class="SCRIPT">MultiMovie.m</a>
</td><td>
This m-script illustrates the geometry of bursting corresponding to Figs. 1, 10 and 11, in the form of a movie, showing
both the time course and the phase-plane dynamics of the model. <!-- V<sub>1,2</sub> and h<sub>1,2</sub>. -->
The program prompts the user to select the number of spikes per burst. Only the initial condition
is affected by user input; all parameters are set to fixed values listed in Appendix A1.
<br><br>
</td></tr>
<tr><td valign="top">
<font color="red">♦</font> <a href="http://web.njit.edu/%7Ematveev/Burst/burstODE.m" class="SCRIPT">burstODE.m</a>
</td><td>
This ODE m-file implements the model equations (Eqs. 6). The file follows the standard format used by the built-in
MATLAB ode integrators.
<br><br>
</td></tr>
<tr><td valign="top">
<font color="red">♦</font> <a href="http://web.njit.edu/%7Ematveev/Burst/Vnullcline.m" class="SCRIPT">Vnullcline.m</a>
</td><td> Calculates the V-nullcline; used by the main MultiMovie script above.
<br><br>
</td></tr>
<!-- tr><td valign=top>
<font color=red>♦</font> <a href="odearguments.m" class=SCRIPT>odearguments.m</a>
</td><td>
A standard MATLAB routine for setting ode integration options. Not critical for current code.
<br><br>
</td></tr -->
</tbody></table>
<hr>
Supported in part by the <b>National Science Foundation</b> grants
<b>DMS 0417416</b> (Victor Matveev), <b>DMS 0615168</b> (Amitabha Bose) <br>
and the <b>National Institutes of Health</b> grant <b>MH-60605</b> (Farzan Nadim).
<br><br>
<!-- =============================================================================== -->
<!-- =============================================================================== -->
<!-- table cellpadding=3><tr><td>
<a href="../scripts.html">[ Back to Scripts ]</a>
</td></tr></table -->
<hr>
<address>
<small>
<a href="http://web.njit.edu/%7Ematveev" target="_top">Victor Matveev</a>
</small>
</address>
<small>
This server is running a
<a href="http://www.redhat.com/" target="_top">Redhat</a> distribution of
<a href="http://www.linux.org/" target="_top">Linux</a>.
<br>
<!-- Created: Sun Apr 12 18:25:17 EDT 1998 -->
<!-- hhmts start -->
Last modified: Feb 4, 2007
<!-- hhmts end -->
</small>
</body></html>