there is no package called ‘shiny’

[csjoannechang]

Hi Mike,

I am using MAC with High Sierra to run the RStudio 1.0.143. I got the error information showing "‘shiny’ had non-zero exit status". Then, I use tool to manually install the "shiny". It showed a 2.2MB file been download but still the "non-zero exit status" appeared again. When I library(shiny), it showed "no package called ‘shiny’".

What should I do? Thank you so much.
Best regards,
Joanne

step(1)-------------------------------------------------------------------
Warning in strptime(xx, f <- "%Y-%m-%d %H:%M:%OS", tz = tz) :
unknown timezone 'zone/tz/2018c.1.0/zoneinfo/Europe/Zurich'
ERROR: dependency ‘promises’ is not available for package ‘shiny’

• removing ‘/Library/Frameworks/R.framework/Versions/3.3/Resources/library/shiny’
  Warning in install.packages :
  installation of package ‘shiny’ had non-zero exit status
  step(2)-------------------------------------------------------------------
  installing the source package ‘shiny’
  trying URL 'https://cran.rstudio.com/src/contrib/shiny_1.1.0.tar.gz'
  Content type 'application/x-gzip' length 2350156 bytes (2.2 MB)
  ==================================================
  downloaded 2.2 MB
  step(3)--------------------------------------------------------------------

library(shiny)
Error in library(shiny) : there is no package called ‘shiny’
runGitHub("SAM", "MikeJSeo")
Error: could not find function "runGitHub"

[MikeJSeo]

dwoll/DVHmetrics#2

Seems like they had a similar issue installying shiny.

[SamGG]

Not sure, but your link could help.
I am wondering whether the promises package has been installed as it is the ERROR line.
install.packages("promises")

[csjoannechang]

Dear Mike and Sam, Thank you for referring me the earlier discussion. I gave up to use SAMR on Mac and tried the win10 and it worked. Joanne 2018-08-01 16:34 GMT+02:00 Samuel Granjeaud <notifications@github.com>:

…

Not sure, but your link could help. I am wondering whether the promises package has been installed as it is the ERROR line. install.packages("promises") — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#34 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Am9861KSHOrvmoIl5v2j3-903J31zdKPks5uMbxygaJpZM4VD8TN> .

[hongyaochen]

I also struggled to use SAMR on Mac but failed,and I have not found a solution to solve the problem.So I wonder you how to run it on win10 please.Thank you so much.

[csjoannechang]

Hi Hongyao, I did nothing but copied and pasted what Mike wrote on introduction page on R on Win10. Good luck. Joanne hongyaochen <notifications@github.com> 於 2018年8月31日 週五 下午2:41寫道：

…

I also struggled to use SAMR on Mac but failed,and I have not found a solution to solve the problem.So I wonder you how to run it on win10 please.Thank you so much. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#34 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Am98675mdoPisYewojlZvAcZzQ0v8Erfks5uWNqBgaJpZM4VD8TN> .

[hongyaochen]

thanks so much, but I cannot install samr with R,could you get it?

[SamGG]

Take a look at #35 and let us know.

[hongyaochen]

hi Sam, after installed "devtools",I did something as what you said,but I met a issue,what should I do?thanks

library(devtools)
install_github("cran/samr")
Downloading GitHub repo cran/samr@master
from URL https://api.github.com/repos/cran/samr/zipball/master
Installing samr
试开URL’https://mirrors.eliteu.cn/CRAN/bin/macosx/el-capitan/contrib/3.5/matrixStats_0.54.0.tgz'
Content type 'application/x-gzip' length 1887128 bytes (1.8 MB)
==================================================
downloaded 1.8 MB

Installing matrixStats
'/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL
'/private/var/folders/5c/r496qy2n6sq6w7jlg65br8lh0000gn/T/RtmpCO9Rpo/devtools1c932471ca9c/matrixStats'
--library='/Library/Frameworks/R.framework/Versions/3.5/Resources/library' --install-tests

• installing binary package ‘matrixStats’ ...
• DONE (matrixStats)
  '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL
  '/private/var/folders/5c/r496qy2n6sq6w7jlg65br8lh0000gn/T/RtmpCO9Rpo/devtools1c936ae22326/cran-samr-4f4a4da'
  --library='/Library/Frameworks/R.framework/Versions/3.5/Resources/library' --install-tests

ERROR: dependency ‘impute’ is not available for package ‘samr’

• removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/samr’
  Installation failed: Command failed (1)

[SamGG]

samr depends on the impute package. impute (previously on CRAN) is available on Bioconductor. This is why R could not solve this dependency automatically. So install impute using the command below, then install samr again.

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("impute")