-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathYEplac112_snapgene.gb
179 lines (179 loc) · 10.5 KB
/
YEplac112_snapgene.gb
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
LOCUS . 4989 bp DNA circular UNK 01-JAN-1980
DEFINITION .
ACCESSION <unknown id>
VERSION <unknown id>
KEYWORDS .
SOURCE
ORGANISM .
.
COMMENT pydna cdseguid=MLKxSGFkZsuuiqozB87sVQQ0xaU 2024-06-11T18:43:07
FEATURES Location/Qualifiers
CDS 3188..4048
/codon_start=1
/gene="bla"
/note="confers resistance to ampicillin, carbenicillin, and
related antibiotics"
/note="color: #ccffcc"
/product="β-lactamase"
/transl_table=1
/translation="MSIQHFRVALIPFFAAFCLPVFA,HPETLVKVKDAEDQLGARVGY
IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEY
SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR
WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRS
ALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGA
SLIKHW*"
/label="AmpR"
rep_origin 4219..4807
/direction=RIGHT
/note="high-copy-number colE1/pMB1/pBR322/pUC origin of
replication"
/note="color: #ffff00"
/label="ori"
CDS 216..500
/codon_start=1
/gene="lacZ"
/product="LacZα fragment of β-galactosidase"
/transl_table=1
/translation="MTMITPSLHACRSTLEDPRVPSSNSLAVVLQRRDWENPGVTQLNR
LAAHPPFASWRNSEEARTDRPSQQLRSLNGEWRLMRYFLLTHLCGISHRI"
/label="lacZα"
/note="color: #993366"
promoter 3083..3187
/gene="bla"
/label="AmpR promoter"
/note="color: #ffffff"
misc_feature 233..289
/gene=""
/note="pUC19 multiple cloning site"
/note="color: #99ccff"
/label="MCS"
promoter 142..172
/note="promoter for the E. coli lac operon"
/note="color: #ffffff"
/label="lac promoter"
primer_bind complement(290..306)
/note="common sequencing primer, one of multiple similar
variants"
/note="color: #a020f0"
/label="M13 fwd"
primer_bind 204..220
/note="common sequencing primer, one of multiple similar
variants"
/note="color: #a020f0"
/label="M13 rev"
protein_bind 180..196
/bound_moiety="lac repressor encoded by lacI"
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-β-D-thiogalactopyranoside (IPTG)."
/note="color: #31849b"
/label="lac operator"
promoter complement(2876..2977)
/gene="S. cerevisiae TRP1"
/label="TRP1 promoter"
/note="color: #ffffff"
CDS complement(2201..2875)
/codon_start=1
/gene="S. cerevisiae TRP1"
/note="yeast auxotrophic marker"
/note="color: #ff7f50"
/product="phosphoribosylanthranilate isomerase, required
for tryptophan biosynthesis"
/transl_table=1
/translation="MSVINFTGSSGPLVKVCGLQSTEAAECALDSDADLLGIICVPNRK
RTIDPVIARKISSLVKAYKNSSGTPKYLVGVFRNQPKEDVLALVNDYGIDIVQLHGDES
WQEYQEFLGLPVIKRLVFPKDCNILLSAASQKPHSFIPLFDSEAGGTGELLDWNSISDW
VGRQESPESLHFMLAGGLTPENVGDALRLNGVIGVDVSGGVETNGVKDSNKIANFVKNA
KK*"
/label="TRP1"
rep_origin 745..2091
/note="yeast 2μ plasmid origin of replication"
/note="color: #ffff00"
/label="2μ ori"
ORIGIN
1 gcgcccaata cgcaaaccgc ctctccccgc gcgttggccg attcattaat gcagctggca
61 cgacaggttt cccgactgga aagcgggcag tgagcgcaac gcaattaatg tgagttagct
121 cactcattag gcaccccagg ctttacactt tatgcttccg gctcgtatgt tgtgtggaat
181 tgtgagcgga taacaatttc acacaggaaa cagctatgac catgattacg ccaagcttgc
241 atgcctgcag gtcgactcta gaggatcccc gggtaccgag ctcgaattca ctggccgtcg
301 ttttacaacg tcgtgactgg gaaaaccctg gcgttaccca acttaatcgc cttgcagcac
361 atcccccttt cgccagctgg cgtaatagcg aagaggcccg caccgatcgc ccttcccaac
421 agttgcgcag cctgaatggc gaatggcgcc tgatgcggta ttttctcctt acgcatctgt
481 gcggtatttc acaccgcata tatcggatcg tacttgttac ccatcattga attttgaaca
541 tccgaacctg ggagttttcc ctgaaacaga tagtatattt gaacctgtat aataatatat
601 agtctagcgc tttacggaag acaatgtatg tatttcggtt cctggagaaa ctattgcatc
661 tattgcatag gtaatcttgc acgtcgcatc cccggttcat tttctgcgtt tccatcttgc
721 acttcaatag catatctttg ttaacgaagc atctgtgctt cattttgtag aacaaaaatg
781 caacgcgaga gcgctaattt ttcaaacaaa gaatctgagc tgcattttta cagaacagaa
841 atgcaacgcg aaagcgctat tttaccaacg aagaatctgt gcttcatttt tgtaaaacaa
901 aaatgcaacg cgagagcgct aatttttcaa acaaagaatc tgagctgcat ttttacagaa
961 cagaaatgca acgcgagagc gctattttac caacaaagaa tctatacttc ttttttgttc
1021 tacaaaaatg catcccgaga gcgctatttt tctaacaaag catcttagat tacttttttt
1081 ctcctttgtg cgctctataa tgcagtctct tgataacttt ttgcactgta ggtccgttaa
1141 ggttagaaga aggctacttt ggtgtctatt ttctcttcca taaaaaaagc ctgactccac
1201 ttcccgcgtt tactgattac tagcgaagct gcgggtgcat tttttcaaga taaaggcatc
1261 cccgattata ttctataccg atgtggattg cgcatacttt gtgaacagaa agtgatagcg
1321 ttgatgattc ttcattggtc agaaaattat gaacggtttc ttctattttg tctctatata
1381 ctacgtatag gaaatgttta cattttcgta ttgttttcga ttcactctat gaatagttct
1441 tactacaatt tttttgtcta aagagtaata ctagagataa acataaaaaa tgtagaggtc
1501 gagtttagat gcaagttcaa ggagcgaaag gtggatgggt aggttatata gggatatagc
1561 acagagatat atagcaaaga gatacttttg agcaatgttt gtggaagcgg tattcgcaat
1621 attttagtag ctcgttacag tccggtgcgt ttttggtttt ttgaaagtgc gtcttcagag
1681 cgcttttggt tttcaaaagc gctctgaagt tcctatactt tctagctaga gaataggaac
1741 ttcggaatag gaacttcaaa gcgtttccga aaacgagcgc ttccgaaaat gcaacgcgag
1801 ctgcgcacat acagctcact gttcacgtcg cacctatatc tgcgtgttgc ctgtatatat
1861 atatacatga gaagaacggc atagtgcgtg tttatgctta aatgcgtact tatatgcgtc
1921 tatttatgta ggatgaaagg tagtctagta cctcctgtga tattatccca ttccatgcgg
1981 ggtatcgtat gcttccttca gcactaccct ttagctgttc tatatgctgc cactcctcaa
2041 ttggattagt ctcatccttc aatgctatca tttcctttga tattggatcg atccgatgat
2101 aagctgtcaa acatgagaat tgatctttta tgcttgcttt tcaaaaggct tgcaggcaag
2161 tgcacaaaca atacttaaat aaatactact cagtaataac ctatttctta gcatttttga
2221 cgaaatttgc tattttgtta gagtctttta caccatttgt ctccacacct ccgcttacat
2281 caacaccaat aacgccattt aatctaagcg catcaccaac attttctggc gtcagtccac
2341 cagctaacat aaaatgtaag ctctcggggc tctcttgcct tccaacccag tcagaaatcg
2401 agttccaatc caaaagttca cctgtcccac ctgcttctga atcaaacaag ggaataaacg
2461 aatgaggttt ctgtgaagct gcactgagta gtatgttgca gtcttttgga aatacgagtc
2521 ttttaataac tggcaaaccg aggaactctt ggtattcttg ccacgactca tctccatgca
2581 gttggacgat atcaatgccg taatcattga ccagagccaa aacatcctcc ttaggttgat
2641 tacgaaacac gccaaccaag tatttcggag tgcctgaact atttttatat gcttttacaa
2701 gacttgaaat tttccttgca ataaccgggt caattgttct ctttctattg ggcacacata
2761 taatacccag caagtcagca tcggaatcta gtgcacattc tgcggcctct gtgctctgca
2821 agccgcaaac tttcaccaat ggaccagaac tacctgtgaa attaataaca gacatactcc
2881 aagctgcctt tgtgtgctta atcacgtata ctcacgtgct caatagtcac caatgccctc
2941 cctcttggcc ctctcctttt cttttttcga ccgaattaat tcttgaagac gaaagggcct
3001 cgtgatacgc ctatttttat aggttaatgt catgataata atggtttctt agacgtcagg
3061 tggcactttt cggggaaatg tgcgcggaac ccctatttgt ttatttttct aaatacattc
3121 aaatatgtat ccgctcatga gacaataacc ctgataaatg cttcaataat attgaaaaag
3181 gaagagtatg agtattcaac atttccgtgt cgcccttatt cccttttttg cggcattttg
3241 ccttcctgtt tttgctcacc cagaaacgct ggtgaaagta aaagatgctg aagatcagtt
3301 gggtgcacga gtgggttaca tcgaactgga tctcaacagc ggtaagatcc ttgagagttt
3361 tcgccccgaa gaacgttttc caatgatgag cacttttaaa gttctgctat gtggcgcggt
3421 attatcccgt attgacgccg ggcaagagca actcggtcgc cgcatacact attctcagaa
3481 tgacttggtt gagtactcac cagtcacaga aaagcatctt acggatggca tgacagtaag
3541 agaattatgc agtgctgcca taaccatgag tgataacact gcggccaact tacttctgac
3601 aacgatcgga ggaccgaagg agctaaccgc ttttttgcac aacatggggg atcatgtaac
3661 tcgccttgat cgttgggaac cggagctgaa tgaagccata ccaaacgacg agcgtgacac
3721 cacgatgcct gtagcaatgg caacaacgtt gcgcaaacta ttaactggcg aactacttac
3781 tctagcttcc cggcaacaat taatagactg gatggaggcg gataaagttg caggaccact
3841 tctgcgctcg gcccttccgg ctggctggtt tattgctgat aaatctggag ccggtgagcg
3901 tgggtctcgc ggtatcattg cagcactggg gccagatggt aagccctccc gtatcgtagt
3961 tatctacacg acggggagtc aggcaactat ggatgaacga aatagacaga tcgctgagat
4021 aggtgcctca ctgattaagc attggtaact gtcagaccaa gtttactcat atatacttta
4081 gattgattta aaacttcatt tttaatttaa aaggatctag gtgaagatcc tttttgataa
4141 tctcatgacc aaaatccctt aacgtgagtt ttcgttccac tgagcgtcag accccgtaga
4201 aaagatcaaa ggatcttctt gagatccttt ttttctgcgc gtaatctgct gcttgcaaac
4261 aaaaaaacca ccgctaccag cggtggtttg tttgccggat caagagctac caactctttt
4321 tccgaaggta actggcttca gcagagcgca gataccaaat actgttcttc tagtgtagcc
4381 gtagttaggc caccacttca agaactctgt agcaccgcct acatacctcg ctctgctaat
4441 cctgttacca gtggctgctg ccagtggcga taagtcgtgt cttaccgggt tggactcaag
4501 acgatagtta ccggataagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc
4561 cagcttggag cgaacgacct acaccgaact gagataccta cagcgtgagc tatgagaaag
4621 cgccacgctt cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac
4681 aggagagcgc acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg
4741 gtttcgccac ctctgacttg agcgtcgatt tttgtgatgc tcgtcagggg ggcggagcct
4801 atggaaaaac gccagcaacg cggccttttt acggttcctg gccttttgct ggccttttgc
4861 tcacatgttc tttcctgcgt tatcccctga ttctgtggat aaccgtatta ccgcctttga
4921 gtgagctgat accgctcgcc gcagccgaac gaccgagcgc agcgagtcag tgagcgagga
4981 agcggaaga
//