diff --git a/biomarker_dbs/inc-types.fasta b/biomarker_dbs/inc-types.fasta new file mode 100644 index 0000000..c03aa22 --- /dev/null +++ b/biomarker_dbs/inc-types.fasta @@ -0,0 +1,278 @@ +>pKPC-CAV1321_1_CP011611 +ATGGTTACCAGGGCTTTCTCTGTAACAGAGAGAGAGACAGGTAAAGAAATTATTTTACGTCCTAATAGCAGCAGGACGGTTCAGTCTATCGCGCTCATGCGCCTTGGGTTGTTTGTGCCATCACCAAAAAGCGTTGGCCGTCAGAGTCGTGAATACAAAACTGTTGGCTTTGATGCCACGAAAGAACTACAGACACTTTCTTTGATGGAGAGCGAGGGTTTCACCAATATCTCGATCGTGGGTCAGCGCCTCGATATGTCTGTTGACTTCAAAACGTGGATGGGAATCATCCGAACGCTAGCTAACCATCCGATTGATAACGATAAGATCAGCCTCAAATTTACTGAGTTTCTGAAGCTCTGTAACCCTGAAAATTATCGTTCCTCTACCGCATCCCGTAAGCGTATCGACGCGTCGTTACGCAGGCTGGCATCCGTGATGTTGTCCTTCACCAGCACCCACTCGTCAAAGGTGTATACGACGCACCTGGTGCAGTCTGCCTTGCTTGACCCGGACTCTGATCAGGTAGAGCTACAGATAGACCCTAAGATATTCGAGTTGTATCAGTACGACCACAAGGTTTTGATGCAGCTGAA +>IncHI1B(R27)_1_AF250878 +ATTCCAGAAAACCGATCTCTTTAAGCTGGCCCAGCGCCTTTTTAACCGTGGCATTCTGGTTACCGAGGTGTGATGACAGTTGGAGTCGTCCACGAAGCCGATCGAATCCGATGCGGTAAAAGGTGCTCGGCAGCTCAGCCAGATACAGGTACAGGGCCTGTGCGGACTCCTTACGGGCCAGTTTTTGCAATGTCTTCAGGTAGAGTCGGGTTTTACCGTCGACGCGATACAGCGTATTGAGCTTCGAATTTGGCTTGATGATGATTTTTCCCGTGGAACTGTCGTAATACGTCGATTCCACCAGGTGCATGTTTATCGTTATCTGATCATCTGTACCGGGTATTTTCTTAATAAATGAAATGTTGGTCCGGGCTATACGCGTCAGCGAAGCATCAAAGCGCTCTTTCAGTTGTTTATCAATGCGCTTGGTATCAAACCCACAAAATTTTGCAAACTCCGGAAAATTCAGCTCCAGCTGACCTTCTGAATCAAGCGGCCGGTTAGACAACGCATAAACGATCCCACACCATGATTTGAAAT +>IncHI1B(pNDM-CIT)_1_JX182975 +ATTCCAGAAAACCGATCTCTTTAAGCTGGCCCAGCGCCTTTTTAACTGTGGCATTCTGGTTGCCAAGATGTGAGGACAGTTGCAGGCGTTCACGCAGCCGGTCAAATCCGATACGGTAAAAGGTGCTCGGTAACTCAGCCAGATACAGATACAGGGCCTGTGCGGACTCCTTACGGGCCAGTTTCTGCAACGTCTTCAGGTAGAGTCGGGTTTTACCGTCGACGCGATACAGCGTATTGAGCTTCGAATTTGGCTTGATGACGATTTTCCCGGTGGAACTGTCGTAGTACGTGGATTCCACGAGGTGCATGTTTATCGTTATCTGATCGTCTGTACCGGGTATTTTCTTAATGAACGAGATACTGGTTCGGGCAATACGCGTCAATGAAGCATCAAAACGCTCTTTCAATTGCCTATCAATGCGCTTAGTGTCAAAACCGCAGAACTTAGCAAACTCCGGGAAATTCAGCTCCAGCTGACCTTCCGAGTCGAGCGGACGGTTAGACAATGCATAAACGATCCCACACCATGATTTGAA +>IncHI2_1_BX664015 +TTTCTCCTGAGTCACCTGTTAACACCCGGTTTCTACGCTTTACTTCATTGGCCAGTACATCCAACGGAAAATATCGTAACGGGGTGACAATGGCAGTGAGTTGACCCACTCACTACCATCGACATTCAAATCCCGGCTTCTCTGGTAGCTATAGTGACAATGGTAATGATGTGTACCTTACTGGCATTGTCATTGTCCTCCGAGTGTGCGTTCAGCTTTGGGAGGACACCGGAACTTAATGCGGCGAGTCACGGCCATTGTGAATCTCGATTGGATTGGCGAATACGGCTTCCGGTTGGGCCAGATGTCAATGGTTATGCTTCATCC +>IncI1-I(gamma)_1_AP005147 +CGAAAGCCGGACGGCAGAATGCGCCATAAGGCATTCAGGAGAGATGGCATGTACGGGCAGTAAGTCAGAAGACTGAAGATGTTCCGGAAGCCATAAAAGGAAAACCCCCACTATCTTTCTTACGAACTTGGCGGAACGACGA +>IncB/O/K/Z_1_CU928147 +TCCGGAAAGTCAGAAAACGGCAGGATGCGCCATAAGGCATTCAGGATGTATGGCAGAAACGACGGCTGTTTGCCGGGGCCGGAAGGCTGAAAAAAGTTTCAGAAGACCATAAAGGAAAACCCCCATAATCTTTCATCGAAACTTGGCGGAA +>IncB/O/K/Z_3_GQ259888 +TCCGGGAAGTCAGAAAATGGCAGGATGCGCCATAAGGCATTCAGGACGTATGGCAGAAACGACGGCAGTTTGCCGGTGCCGGAAGGCTGAAAAAAGTTTCAGAAGGCCATAAAAGGAAAACCCCCATAATCTTCTCATCGAACTTGGCGGAA +>IncB/O/K/Z_2_GU256641 +GCGGTCCGGAAAGCCAGAAAACGGCAGAATGCGCCATAAGGCATTCAGGACGTATGGCAGAAACGACGGCAGTTTGCCGGTGCCGGAAGGCTGAAAAAAGTTTCAGAAGACCATAAAGGAAAACCCCCACTATTTTTCCTCGAACTTGGCGGAACGCAGA +>IncB/O/K/Z_4_FN868832 +TCCGGGAAGTCAGAAAACGGCAGGATGCGCCATAAGGCATTCAGGACGTATGGCAGAAACGACGGCAGTTTGCCGGTGCCGGAAGGCTGAAAAAAGTTTCAGAAGGCCATAAAGGAAAACCCCCACTATCTTTCCTCGAACTTTGGCGG +>IncL_1_JN626286 +CCGCCTGAAAAGGCGGTTTTTTCATGTATACTCAGGTGGTTATAGTCGTATGCTGTGGGAGGAAGAGTGAACAGAGTTACTGAGCGCCAGGAACAGAAGAGTAACCCGGAGTTCCAGAGAGAGTACCGGAACCGTATCCGGGAAACACACGACCAGTTAAACCTTTATCTCCCCAAAGATGCAAAAAGAATGTTGATAGAGATCACAAAAGTTAAAAAACTCACTCAGGCTGAAGTCATTGAATTTCTTGTCAAAAGCTATTACGACGGATTGAAATTTGACGATTCTGAAGAGTGATCTTACTATGTAAAAGCGGGTTCGCAGGTATTGCCCCGCTTAGAAACGCATGATATGTTAAGCGGCGTTTACATAACCTTACGGGGTTATTACTGAATTTAGCACGGGAAGAGCGGCCCGGAGATGTACCGCTTAGGAGTGGCAGGAGCCACAAAAAGTAAAACCCCCTGATCCCTGTTGGAAACTTTGGCCGGTCTCTCAGGAATCAGGGGGTGCAAACTGCCCACTGGCAGAAAGGATTATAGCAAATGCGTAACCTATTGCAATACAGCCCGGCCAATATGTGCAGGGGCTGGTGAATCAAAAGAATCCATACCTACAGCTTTCTGACATTGAGTCAGTAGAAGGTCTTTCGCCGGAGTTC +>IncM2_1_AF550415 +CCGCCGAATATGGCGGGTTTTTTGTGTATACTCAAGTGGTTATAGTCGTATGTTGTGGGAGGAAGTAGTGAACAGAGTTACTGAGCGCCAGGAACAGAAGAGTAACCCGGAGTTCCAGAGAGAGTACCGGAACCGTATCCGGGAAACACACGACCAGTTAAACCTTTATCTCCCCAAAGATGCAAAAAGAATGTTGATAGAGATCACAAAAGTTAAAAAACTCACTCAGGCTGAAGTCATTGAATTTCTTGTCAAAAGTTATTACGACGGATTGAAATTTGACGATTCTGAAGAGTGATCTTACTATGTAAAAGCGGGTTCGCAGGTATTGCCCCGCTTAGAAACGCATGATATGTTAAGCGGCGTTTACATAACCTTACGGGGTTATTACAGAATTTAGCACGGGAAGAGCGGCCCGGAGATGTACCGCTTGGGGTGTGGCAGGAGCCACAAAAAGTAAAACCCCCTGATTCATCCTCTCACTTTGGCCGGTCAGAGATGAAATCAGGGGGCGCAAACTGCCTTGCTGGCAGAAAGGATTATAGCAAATGCGTACCCTATTGCAATACAGCCCGGCCAATAAGTGCAGGGGCTGGTGAATCAAAAGAATCCATACCTACAGCTTTCTGACATTGAGTCAGTAGAAGGTCTTTCGCCGGAGTTC +>IncI2(Delta)_1_AP002527 +CAGGCTTGAACATCGTTGATCGATTGCGCCCATGCTGCTAAATTTGCAGGCAAGTTTTCCGCGATTTGTAAATGCAGAAAACGAGGTGCTGAAATTTTGTTCAAGAACGTAAATTTCAGATAAAGAAAACCCCCGTAATCTCGTGTTTTCCAGGCAGCGTAGATTAGCGGGGGTTGCCCTCAAGGCCGAGCCTTGAGCTTATTTATTTCAGGTATGCTTGTTACCTGAAATGGAGTTTAATTCCATGAGAAGGAAATATCAACTCTTACAGTGCAAGCTAAGTGCAGCTTGCTGTGATTAGCAAACGTCACTGGTC +>IncN_1_AY046276 +GTCTAACGAGCTTACCGAAGCTGCTTACTACCTCTCGCTAAAAGCAAAGCGCGTTCTCTGGTTATGTCTTATGCAGACGTATTTCACAGCTTCAGTAAGCGAAGATGATGATGAGATGGCTGTACTCGGTGACTCTACTTTCAAAGTAAAGGTGGCTGACTATCAGCAAATTTTTCAGGTAAGCCGTAACCAGGCTATCAAGGATGTTAAAGAAGGCGTGTTTGAGTTAAGCCGTTCTGCGGTAATCTTTTACCCGAAAGAAGGGAGTTTTGACTGCGTCGCGCGCCCCTGGCTAACAGAGGCTGGCAGCCGATCAGCTCGTGGTATCTGGGAAATCGAATTTAACCATAAACTCCTGCGGTACATTTACGGCCTGACGAACCAGTTCACCACCTACTCGCTCCGCGATTGTGGCAGTCTTCGAAATCCACGGACGATCCGCCTTTATGAAAGTCTTGCTCAATTCAAATCTTCAGGCTTATGGGTTACTACTCATGCTTGGTTAAATGACCGT +>IncFIA_1_AP001918 +TGTCTGTGACAAATTGCCCTTAACCCTGTGACAAATTGCCCTCAGAAGAAGCTGTTTTTTCACAAAGTTATCCCTGCTTATTGACTCTTTTTTATTTAGTGTGACAATCTAAAAACTTGTCACACTTCACATGGATCTGTCATGGCGGAAACAGCGGTTATCAATCACAAGAAACGTAAAAATAGCCCGCGAATCGTCCAGTCAAACGACCTCACTGAGGCGGCATATAGTCTCTCCCGGGATCAAAAACGTATGCTGTATCTGTTCGTTGACCAGATCAGAAAATCTGATGGCACCCTACAGGAACATGACGGTATCTGCGAGATCCATGTTGCTAAATATGCTGAAATATTCGGATTGACCTCTGCGGAAGCCAGTAAGGATATAC +>IncW_1_EF633507 +CCTAAGAACAACAAAGCCCCCGGCCATCGTATCAACGAGATCATCAAGACGAGCCTCGCGCTCGAAATGGAGGATGCCCGCGAAGCTGGCTTAGTCGGCTACATGGCCCGTTGCCTTGTGCAAGCGACCATGCCCCACACCGACCCCAAGACCAGCTACTTTGAGCGCACCAATGGCATCGTCACCTTGTCGATCATGGGCAAGCCGAGCATCGGCCTGCCCTACGGTTCTATGCCGCGCACC +>IncC_1_JN157804 +GAGAACCAAAGACAAAGACCTGGAGAAACTCGACGTAATCAAAGACTCACCGCAAATGAGCCTGTTTGAGATCATTGAATCTCCGGCCAAGAAAGACGACTACTCCAACACCATCGAGATCTACGATGCGCTGCCGAAGTACATTTGGGACCAAAAGCGTGAGCATGAAGATTTATCCAACGCTGTAGTGACACGACAATGCACCATCAGAGGCCAGCATTTCACGGTGAAGGTGAAGCCAGCCATCATCGAGAAGGATGACGGAAGAACCGTGCTGATCTACGCGGGACAGCGAGAGGAAATCCTTGAGGATGCTCTACGCAAGCTCGCAGTGAACGGGAAAGGCCATATCATCGAGGGCAAGGCTGGAGTCATGTTCACTCTGTACGAACTCCAGAAAGAGCTCTCGAAGATGGG +>IncP1_1_BN000925 +CAGCAACGCGGCCTGCTTGGCCTCGCTGACCTGTTTTGCCAGGTCCTCGCCGGCGGTTTTTCGCTTCTTGGTCGTCATAGTTCCTCGCGTGTCGATGGTCATCGACTTCGCCAAACCTGCCGCCTCCTGTTCGAGACGACGCGAACGCTCCACGGCGGCCGATGGCGCGGGCAGGGCAGGGGGAGCCAGTTGCACGCTGTCGCGCTCGATCTTGGCCGTAGCTTGCTGGACCATCGAGCCGACGGACTGGAAGGTTTCGCGGGGCGCACGCATGACGGTGCGGCTTGCGATGGTTTCGGCATCCTCGGCGGAAAACCCCGCGTCGATCAGTTCTTGCCTGTATGCCTTCCGGTCAAACGTCCGA +>IncP1_3_KX377410 +GCAGCTGACGCTTTTCGATATTGCTCCATGGCCTGATTCCATGCGAGCACTACCTAACGACTATGCGCGCTCTGCGCTCTTTACTGTTAAAAATAAGCGTCAGCCCCGCGAAGCTCTGCAAAAAAAAGAAATTTATCATATCAATAAGGACGTGCGTATCACGTATACCGGACTTGAGCTAAGGGCCGATGATGACGAGTTGGTATGGCAGCAAGTTCTAGAGTACGCCAAAAGGAAACCCATGGGAGAACCCATTACTTTCACTTTTTATGAACTCTGTCAGGATTTAGGATGGTCTTACAATGGGCGTTACATCAGTAAAGCTGAGGAGTGTCTTACCCGGCTGCAGGCAACGGCCATGCAGTTCATTTCTGATCGCGTCGGGCAATTGGAGTCGGTTTCTCTAATCGGACGATTTCGCGTTATTGAGCGCGGTACAAGGTCATCGCGCTGTGAAGTGATGATTGATAAGGAAATGGTTTTACTCTTTGCCGGGGACCATTATTCGAAATTTGTTTGGGAAAAATATCGCAAGCTCTCCCCCACCGCTCGCCGCTTGTTTGATTACTTTGGTTCCCACCGCGAACCCTACCCTATGAAACTGGATACCTTCAAGCTGATGTGCGGTTCTGATTCAGATCGCATTAAAAAGTGGCGCGAACAGGTCAATAAAGCCTGCGTTGAACTTAAAGAAAGCGGCCTCATTCACAGTGCCTGGGTAGATAAAGATCGTATCTACTGTAAG +>IncT_1_AP004237 +TTGGCCTGTTTGTGCCTAAACCATCAAGGTCATCTGACTACAGCCCGATGATTGATGTCAGTGAATTAAGTTCTACCTTTGAATTTGCAAGACTTGAGGGGTTTACTGACATAAAAATCACTGGTGAACGTCTTGATATGGATACTGATTTCAAGGTGTGGATCGGCATAGTCAAAGCGTTCAGCAAGTACGGGATTTCGTCAAACCGCATCAAACTAAAGTTTTCTGAGTTCGCAAAAGATTGTGGTTTCCCCGGTAAAAAACTGGACAAGAAACTGAGAGCGCATATAGATGAATCGCTTCGTAAAATCAGGGGGAAATCGATCTCATTTAAGCGAGGCAAAGATTCACAATCTGCATATCATACCGGCCTCATAAAGATAGCCTATTTCAATGCCGATACAGACGTTGTGGAACTGGAAGCAGACGAGCGATTATGGGAGTTATACTACTTTGATTATCGTGTTGTTCTTCAACTACATGCAATAAAAGCCCTTCCACGTCTAGAAGTTGCACAAGCCCTGTATACCTTCCTTGCAAGCCTTCCAAGTAACCCGGCTCCTATCTCTTTTGAACGCCTACGTGAAAGGTTGTCTCTGATCAGTCAGGTTAAAGAACAGAATCGAATCATCAAAAAAGCGATTACTAAGCTGATAGATATCGGCTATTTGGACGCTTCTATGGTGAAAAAAGGACAAGAGAATTACCTCATATTCACAAGCGAAGTCCAAAGCTAAGTGTAATCAACG +>IncR_1_DQ449578 +TCGCTTCATTCCTGCTTCAGCCAGCCACGGACGTTTAACTTCTTCAAACTCACCTTCTTTTGGATAAAAGGTAACCGTTGATTCGCCCAGAGCATTTACCCCAGCCTTCACATCACGACTGGCGACAGACGTAGCGACATTGAAGTATTTGACGTAATCGGAAACGCTGATTTTGAAGAGCGGCAATACGTCAGAGTCATCTTCCTGGCTGTCATTAAAATAGGCCTGCATGAGGCATAACCACAGCACAC +>IncFII(S)_1_CP000858 +CTAAAGAATTTTGATGGCTGGCCACGCCGTAAGGTGGCAGGGAACTGGTTCTGATGAGGTGTCTACCCGGGACCAGAAAAGCAAAAACCCCGATAATCTTCTCATTTCTTGGCGGGAACGAAAGATTAACGGGGCCTACTTAAACTGTATAGCCACCAATCAGGCTATGCAGGGAGTATAGTTTTATGCTCAGAAAATTTCAATACTTGTTTCTGTGGCATTTACTCCTTCCGTGCATTGTAAGTGCAGGCAGAAGTGACTG +>IncFII(K)_1_CP000648 +TCTTCTTCAATCTTGGCGGAAGGAAAAGATTAACGGGGCCTTCATAAACTGCATAGAACGTGTTGCTCTATGCGGGGAGTATATGTACATGCTCAGAAAACTTCAAGATCAGTTTCTGTGTCATTCGCTCCTTCCGTGCAACATAAGC +>IncU_1_DQ401103 +TCACGACACAAGCGCAAGGGGCTTTTTCTCGCTCCTGGTGCAATGGCCAACCGGCAAACGTCAATCCTCTTTCCCTCTTGAGCAGATGCCAACAGTCCTTAATGCTGTTGATCATCGTCTTGATACCTGGCTATCACAGGCCGAGTTTATGCGGCCAAACAGGCGAGTCGTGAACCTCCTTCGGATTGGTTTGTTATTCGCTGATCTCGATACCTACAAGATGCCCTGGGCTCAAGGTCGCAAGCCTGAAGAACTGGCGGCGGCCATCACGTACTTTTGCCAGTCTGAAGGCATACCGCAGCCATCCATCATGGTCTATTCAGGGCGTGGCATTCAGGCTAAATGGCTACTGGAAAGGCCAGTACCTCGCCAAGCCCTGCCCCGCTGGAATGCTTGCCAAACCCATCTAATCAACAAGCTGGCCGAGCTGGGCGCTGATCCAGGGGCAAAGGATGCAAGCCGAGTGCTTCGCCTGGTCAATACCGTGAATTCAAAGAGCGGGGCCGTGTGCCGTGTGGTTCACGTACTGGAAGAAGGGGGCTTACCCATTCGCTACAACTTCGAG +>IncX1_1_EU370913 +ATGGCTAAAATCTATCAATTCCCTCAGGGGGAAGAACGTGCTAAATTCAGGAAAGAAATTGCCAGGGAGCGTAAGAAACGTTTTGCAGTGAAAACAGGGAGCACTTTTGTTAAGTGGCTTGGCTGGGGATGGTTTTATCTTCGTCTTCTTGTCGCGAGTGTTTTACATTTTATCTTTGTTTTTGTGTTAGCCATTCTTGGTGCGTTTAAATGGGCTGTGTTCTGGCTGGGTGGTATTTTGTGTGTCATCACCTGGTATCATCTCAATCAGCAGTTATGGACGCCACAAAATCTGACTATACCGGTGATTACGGCAACCTGGATTTTGGGACTGCTGGCTGAGCCTCTGATGGAGCTGCTCAACAAAACTATGCC +>IncX2_1_JQ269335 +ATGAGACTCAAGGTCATGATGGACGTGAACAAAAAAACGAAAATTCGCCACCGAAACGAGCTAAATCACACCCTGGCTCAACTTCCTTTGCCCGCAAAGCGAGTGATGTATATGGCGCTTGCTCCCATTGATAGCAAAGAACCTCTTGAACGAGGGCGAGTTTTCAAAATTAGGGCTGAAGACCTTGCAGCGCTCGCCAAAATCACCCCATCGCTTGCTTATCGACAATTAAAAGAGGGTGGTAAATTACTTGGTGCCAGCAAAATTTCGCTAAGAGGGGATGATATCATTGCTTTAGCTAAAGAGCTTAACCTGCCCTTTACTGCTAAAAACTCCCCTGAAGAGTTAGATCTTAACATTATTGAGTGGATAGC +>IncY_1_K02380 +AATTCAAACAACACTGTGCAGCCTGTAGCGTTGATGCGCTTGGGGGTATTCGTGCCGAAGCCATCAAAGAGCAAAGGAGAAAGTAAAGAGATTGATGCCACCAAAGCGTTTTCCCAGCTGGAGATAGCTAAAGCCGAGGGTTACGATGATATTAAAATCACCGGTCCTCGACTCGATATGGATACTGATTTCAAAACGTGGATCGGTGTCATCTACGCGTTCAGCAAATACGGCTTGTCCTCAAACACCATCCAGTTATCGTTTCAGGAATTCGCTAAAGCCTGTGGTTTCCCCTCAAAACGTCTGGATGCGAAACTGCGTTTAACCATTCATGAATCACTTGGACGCTTGCGTAACAAGGGTATCGCTTTTAAGCGCGGAAAAGATGCTAAAGGCGGCTATCAGACTGGTCTGCTGAAGGTCGGGCGTTTTGATGCTGACCTTGATCTGATAGAGCTGGAGGCTGATTCGAAGTTGTGGGAGCTGTTCCAGCTTGATTATCGCGTTCTGTTGCAACACCACGCCTTGCGTGCCCTTCCGAAGAAAGAAGCTGCACAAGCCATTTACACTTTCATCGAAAGCCTTCCGCAGAACCCGTTGCCGCTATCGTTCGCGCGAATCCGTGAGCGCCTGGCTTTGCAGTCAGCTGTTGGCGAGCAAAACCGTATCATTAAGAAAGCGATAGAACAGCTTAAAACAATCGGCTATCTCGACTGTTCTATTGAGAAGAAAGGCCGGGAAAGTTTTGTAATCGTCCATTCTCGC +>IncFIB(AP001918)_1_AP001918 +CTGTTTATTCTTTTACTGTCCACAGGCAGAAGGCTTTCTGGAAAACGAAAATTCAGACATCAAAAAACTGTTCGGCGAGGTGGATAAGTCGTCCGGTGAGCTGGTGACACTGACACCAAACAATAACAACACCGTACAACCTGTGGCGCTGATGCGTCTGGGCGTTTTTGTACCGACCCTTAAATCACTGAAGAACAGTAAAAAAAATACACTGTCACGTACTGATGCCACGGAAGAGCTGACTCGTCTTTCCCTGGCCCGTGCTGAGGGATTCGATAAGGTTGAGATCACCGGCCCCCGCCTGGATATGGATAACGATTTCAAGACCTGGGTGGGGATCATTCATTCCTTTGCCCGCCATAACGTGATTGGTGACAAAGTTGAACTGCCTTTTGTTGAGTTTGCAAAACTGTGTGGTATACCTTCAAGCCAGTCATCCCGCAGGCTGCGTGAGCGCATCAGCCCTTCCCTGAAGCGCATTGCCGGTACCGTGATCTCGTTTTCCCGTACCGATGAGAAGCACACCCGGGAATACATCACCCATCTGGTACAGTCAGCCTACTACGATACTGAGCGGGATATTGTTCAGTTACAGGCTGATCCCCGTCTGTTTGAACTGTACCAGTTTGACAGAAAAGTCCTTCTCCAGCTTAAGGCGATTAATGCCCTGAAGCGACGGGAG +>IncFII_1_AY458016 +CACACCATCCTGCACTTACAATGCGCAGAAGGAGCGAGCACAGAAAGAAGTCTTGAACTTTTCCGGGCATATAACTATACTCCCCGCATAGCTGAATTGTTGGCTATACGGTTTAAGTGGGCCCCGGTAATCTTTTCGTACTCGCCAAAGTTGAAGAAGATTATCGGGGTTTTTGCTTTTCTGGCTCCTGTAAATCCACATCAGAACCAGTTCCTTGCCACCTTACGGCGTGGCCAGCCACAAAATTCCTTAAACGATCAG +>IncFIC(FII)_1_AP001918 +CACACCATCCTGCACTTACAATGCACAGAAGGAGTGAGCACAGAAAGAAGTCTTGAACTTTTCCGGGCATATAACTATACTCCCCGCATAGCTGAATTGTTGGCTATACGGTTTAAGTGGATCCCGGTAATCTTCTCCTCGTCGCCAAACTAGATGAAGATTATCGGGGTTTTTGCTTTTCTGGCTCCTGTAAATCCACATCAGAACCAGTTCCCTGCCACCTTATGGCGTGGCCAGCCACAAAATTCCTTAAACGATCAGCAATCTATCACTCACGCCTGAGATAAGCAAGAATGTGAATATTTACAAAGTCGCTCTGCGTTTCAGCTCTGATTCAATCAGTTTTTCAAGCATCTGCGCCTGGGTAATACCTTCCTCATCTGCCAGTTCACTCAGCCTGTCTTTTAACCGGGCCTGGATAACCGCATGAAAAGCCTTATGAGTGTTGCTTCTGCGAGCTAGAGAAGCCCTTTGCCTCTCTCTGGCCGGAACAGGGTTA +>IncFII(pKPX1)_1_AP012055 +GAGAAATATTCCCGTTTACGCTGGCGAGCTACGTCGCGCTTAGCTTTCATTCGCGATAAACCGGCGGCGGCTTTGCGGGTCCAGTTCTCGACTCTGATGGAAATCAGGCGAATATCTCCCGACGAGATGACTTCATTCGGATCAGCCTTTAGTAGCCTGGCGCGTTCACGATATGCCTGCTTCAGGGGAATTCCCAGAATGGCAAAGAAGTCCTCAGTCACCTCTATGTGCTTACAGGCGCAACGGGCATCATAAGGATTGAAGGGGGCTTTGTCTGTGATGATGGCATTAAGCCAGTACAAGCGATCACATCCCCGGCTAGCCCGAGAAATCGACTTATGACCGCCATCACTGCGCGTTGCCAGACCTGCACGTTCAGCCAGTGTTTCAAGGTTGTGCCGGGTCTGCCAGTCTCGTAAATCAACATCGTCGAGAATGGCCAGCATCAGCTCGCAAAGTGTCTCAAGCCCAAATTTGTTGGCTTCGTTAACCCAGTATCTGTTGTGCCGGATACGGCGACGCAGTTCTGCTTTGATTTTCTGACGGCCCGCAGGGGTGGCAAGTGACTTGATCCACC +>IncFII(Yp)_1_CP000670 +TGGTAGGGAACTGGTTCTGATGAGGTGTCTACCCGGGACCAGAAAAGCAAAAACCCCGATAATCTTCACCAGGTTTGGCGACTAAGAGAAGATTAACGGGGCCTACTTAAACTGTATAGAAGCTGTTGCTCTATGCAGGGAGTATAGTTTTATGCTCAGAAAACTGCAATACCCGTTTCTGTGCCATTTACTCCTTCCGTGCAACATAAGTGCGGGAAGGTGTGACTGAC +>IncHI1A_1_AF250878 +CGGATCACTGGTCTTAAGCTTTCGATGTCAACCGATTTTAAGTGTTGGCTCGGTTGCATAATGGCGTTCAGCAAATATGGTTTCGCTTCCGATAAAATCACATTGTCATTCAATGAGTTTGCAAAAATGTGTGGTATCAGTTCTACAAACATAAACAAGCGAACTCGCTCACGATTTCAGGAGGCGCTAGCAAACCTAGCTTCCGTTGTGATTTCTTTCCGTGATTCAAAAACTGAACGTTTTACTGTCACGCACCTTGTGCAGAAAGCAGTGATTGATCCTAAGAAGGACACCGTAGAGTTGGTGGGCGATCCCTCAATGTGGGAGCTTTACCGGTATGATCATAAAACCTTACTTAGTTTGCAGGTGCTTTCGGTTCTCGCTAAAAAAGAGGCAGCACAAAGCCTGTACATATATTTT +>IncHI2A_1_BX664015 +AGATCGGAGGGTTATGACGACATCAAGATAACTGGTGTCAAACTATCTATGTCTACCGACTTTAAGTGCTGGCTCGGGATCATCATGGCTTTCAGTAAATATGGTTTTACTTCCGAGAAGATTAGCCTGACTTTTAACGAGTTTGCGAAGATGTGTGGTATCAGTTCAACAAACATCAACAAACGAACTCGTGCGCGCTTTAAAGAGTCATTAATGAACCTTGCATCGGTAGTGCTTGCCTTCTCAGACTCTCGTAGTGGTCGGTTCACAGTAACGCATCTGGTGCAGAAGGCTATGATTGATCCAAAAAGCGATACTGTTGAGCTGGTTGGGGATCCTTCTATGTGGGAACTGTATCGTTACGACCATAAGACATTGTTAAGCCTTCAGGTTCTATACATTTTGGCTAAAAAAGAAGCTGCGCAATCTCTCTATATTTATTTTGAAGCAATGCCAGCTGGTACGTTGTTCGTTAATATGAAACGGTTGAGGGAAAGGTTGCTTCTTACAACCCCTATTCGTACGCAAAACCAGATAATTCGTAAAGCAATGCGGGAACTTGAATCTATCGGATATCTCGATTATCAAGAAGTTAAGAAAGGTCGCGACATACAATTTCAGATCTTCAAA +>IncHI1B(pNDM-MAR)_1_JN420336 +CTGATTCTTTTCGAGACAGGGTCTTCAATATTTTTAAGTAAAGTCGGGTCTTCCCGTCGACACGATACAGAGTATTCAAATCCGGATTTGGCCTGATAATGACCTCATCGGTTCCCTCATCATAGTAAGAAGTAGACACCAGGCTCATGTCGATCTTTACTTTTTTCCCTTCTACTGTTGAGTTTTTGATGAACTGGAAATGGGTGTGCTGGATCCGTGTCAGTGAGTCGCTAAAACGTTTCCTTAACCTTGAATCAACTCGTTTTGTAGCAAGCCCACAACTGAAAGCAAAATCAATAAAATTGACCCTAACAGTCCCATCAGGCTCAAGAAATGTGTTGGCGAGTGTGTCCACGATCCCTAGCCAGACTTTGAAATCCGTATCCATATCAAGCCTGGGCCCAAAAATACTAATCTTTTCGTACCCCTCTCCAGCGATAGAAGAAAGACGACACAACTCAGTCGTTGCATCGATGACATGACCTCGTGCCATAGGGTCACTGCCATCCTTGACTGTCGGAACAAAGACCCCCAATCGCAGTAGCGATTTGGGTTGAATACTCTGTTTTG +>IncFIA(HI1)_1_AF250878 +CTTTCTGTGACAAGTTGCCCTTAACCCTGTGACAAATTGCCCTCAGGAAGCGTTGCTTTTCACAAAGTTATCCATCCCTGTTGACTCTGTTTTATGAAGTGTGACAATCTTAAAGTCTGTCACACTTCACATGGACCTGTCATGGCGGAAATAGCGGTTATAAACCATAAAAAACGTAAAAATAGCCCGCGGATTGTCCAGTCAAATGAGCTGACTGAGGCGGCATATAGTCTCTCCAGGGATCAAAAGCGTCTGCTGTATCTGTTCGTTCACCAGATCAGAAAATCCGACGGCTCCCTGCAGGAACATGACGGCATCTGCGAAATTCACGTTGCTAAATACGCTGAAACATTCGGGTTGACCTCCGCTGAAGCCAGTAAGGATATAC +>IncHI1A(NDM-CIT)_1_JX182975 +CGGATCACTGGCCTTAAGCTTTCGATGTCCACGGACTTCAAGTGTTGGCTTGGGTGCATTATGGCGTTCAGTAAATATGGATTCGCCTCCGAGAAAATAACATTGTCGTTCAATGAGTTTGCAAAAATGTGTGGTATCAGTTCTACAAATATCAACAAGCGAACCCGTTCACGATTTCAGGAAGCGCTGGCAAACCTCGCGTCCGTTGTTATTTCTTTCCGTGATTCTAAAACTGAACGCTTCACTGTCACACACCTTGTGCAGAAAGCTATGATTGACCCTAAGAAGGACACAGTAGAGCTCGTGGGTGATCCCTCGATGTGGGAGCTTTACCGGTATGATCATAAAACCCTATTAAGCTTACAGGTACTGTCGGTTCTCGCCAAAAAAGAAGCTGCACAGAGCCTGTACATCTATTTT +>IncN2_1_JF785549 +GGGTGAAGATATGGCATTCACCCACTCCATTCTGTGCCAGGTCGGTTTGCCCCGTTCTAAGGTGGCAGGGCGTGAGTTTATGCGCCGTTCTGGTGATGCCTGGCTCGTCGTACAGGCAGGCTGGATTGATGAAGGCAGTGGCCCGGTAGAGCAGCCTTTACCCTATGGCGCTATGCCGCGACTCACGTTCGCCTGGATTTCATCGTATGCACTGCGCAACAAAACGCGGGAAATCGCCATCGGCCACAGCGCTAATGAGTTTCTTCACCTTATGGGGATGGACTCACAGGGAACCCGTCATAAAACGCTGCGTACACAAATGCAGGCGCTGGCCGCGTGTCGTTTGCAGCTGGGCTTTAAGGGCCGGACCTATAACGGCCAGCCTGTCGAACAGTTTGACGCCTGGATCAAAGATGGTGACGCGAAGCAGCTCACGCTATGGCCGGGAACACTCACCCTGTCCGAAGGCTATTATAA +>IncN3_1_EF219134 +TTATAATAGCCTTCGGACAGGGTGAGTGTTCCCGGCCATAGCGTGAGCTGCTTCGCGTCACCATCTTTGATCCAGGCATCAAACTGTTCGACGGGCTGGCCGTTATAGGTCCGGCCCTTAAAGCCCAGCTGCAAACGACACGCGGCCAGTGCCTGCATTTGTGTACGCAGCGTTTTATGACGGGTTCCCTGTGAGTCCATCCCCATAAGGTGAAGAAACTCATTAGCGCTATGGCCGATGGAAATTTCCCTTGTTTTGTTGCGCAGTGCATACGATGAAATCCAGGCGAACGTGAGTCGCGGCATAGCCCCATAAGGTAGCGGCTGCTCTACCGGGCCATTACCTTCATCCAGCCATCCGGCCTGGACAACAAGCCAGGCATCACCAGAGCGGCGCATAAACTCGCGCCCGGCCACTTTAGAACGAGGCAAACCGACCTGGCACAGAATGGAGTGAGTGAACGCCATATCATCACCC +>IncX3_1_JN247852 +ATGCGGTTGTTGCTATCTTTAGATATGAAGATCCTCAGATCTTCATATCTAAAGGTGAGAGGTTTTTTAATTAAAGGTTGTATTGTTGTCTTGAATTACAACCTTTGTGGGGTTATGATTTGCCTACATAGGAAAGGTTATATGAGGCTTATCGTGAAGACAGTAACGGGATTAACGAAAGTTAGACATAGAAATGAAGTTGGGGTAACTCTTGCATCCCTTTCCCTTTCAGCAAAAAGAGTGCTTTTTCTGGCTCTTTGCCAGATTGATACAAAGGAAATGTTAGATGATGATATTTTGGAGGTTGATGCTGACTTTTTTTCAAAAGCTACTTCTTTAGATAAATATGCCTCTTATGCAGCTCTGAAAGAGGG +>IncX3(pEC14)_1_JN935899 +ATGAGACTTAAAGTTATGATGGATGTGAATAAAAAAACAAAGATTCGTCACAGAAATGAACTAAACCATACTTTAGCCCAACTCCCCTTACCCGCTAAGCGAGTAATGTATATGGCGTTAGCTCCGATTGATAGTAAAGAGCCTCTTGAAAGAGGGCGGATCTTTAATATTAGAGCTGAAGATCTTGCTAGTCTTGCCAAAATTACTCCTTCGTTGGCTTATAGGCAGTTGAAAGAAGGTGGCAAAATTTTAGGAGCGAGCAAGATCTCTTTGAGAGGTGATGATATTATTGCTTTAGCTAAAGAGCTTAACCTCCCCTTTAATTCAAAAAATACGCCTGATGAATTAGACCTCAATATCACTGAATGGATTGC +>IncX4_1_CP002895 +ATGAGAATGACGACAAATAAGACTTCCCTTTCTCGCTTAACAAAAGTGAGACATCGAAATGAATTGAATTCAACGCTGTCAACATTGCCTATGGCTGCTAAAAAAGTCTTATTTTTAGCCATGTGCCAGATAAACTCTAAAAATGAATTCGATGATGATCACATATTTTATGTGACAGTTGCCGATTACATTAAATGGGTTCAGGTTAAGCCTGATGCGGCTTATCTTGCTTTGAGGGATGGCTCTAATATATTAGATACGACGCTTCTTAAGCTGAAACATGATGAAATATTAGAACTGAGTAGTGATTTGGGATTTAAGTTCACTAAAAGTAATGTACCTGATTCAATGAATTTGAGTCTGACTGTTTTTTC +>IncFIB(S)_1_FN432031 +GGACAAGGACAATCTGGACATAAAAAAGTTGTTTGTAGAGGTGGATAAATCCTCCGGTGAAATCGTAAATCTCACTCCTAATGCCAGTAATACCGTGCAGCCTGTAGCTCTGATGCGGCTTGGAGTATTTGTTCCTACGCTTAAGTCACTGAAAAACCGTAAAAAGAACACGCTTTCGCGTACTGATGCGTCGGAAGAACTGACGCGTCTGTCTCTCGCCAGGGCCGAGGGGTTTGATAAAGTGGAGATCACTGGTCCCCGCCTGGATATGGATAATGACTTCAAGACCTGGGTAGGGGTGATTCATTCCTTTGCCCGGCATAAAGTTATTGGCGATAAAGTTGAGCTGTCGTTTGTCGAATTCGCCAAACTCTGTGGGATCCCCTCCAGTCAGTCATCCCGGAAGCTCCGGGAACGTATCAGTCCTTCACTTAAGCGTATCGCGGGTACTGTGATCTCGTTTTCCCGCACAACGGAGAAGCACACCAAAGAGTACATTACGCATCTGGTACAGTCGGCTTACTATGATACGGAAAAAGATATCGTTCAGCTGCAAGCCGATCCGCGCCTCTTTGAACTCTACCAGTTTGACCGGAAAGTGCTGCTGCAGCTCAAGGCCATCAATGCCCTGAAGCGCCGGGAG +>IncFIB(pNDM-Mar)_1_JN420336 +TATCAAGAGCCTTAAGGCGAAGATAAACCTTATAGTCAATCTGATAGAGCTCCTGAATCCGGGGATCTCCCTCTATCTCAATCTCATTGGTTTTTATGTTGTACCGTGCCCAGTTAATGAGGCCGGTCGTGAGGGTTGAATCTTCATTGCGGAACTGAAAAGTGACCATTTTCAGTTTAATCATCGAAGCATCGATACGTTGTTTCATGGGCTTATTCGACCTCGAGGGGTCAAACCCACAATTTTTAAGGAAGGTGCTAAAAGGAAGCTTAATCCTTCCTGAGTAATGGCCATGGTCATGTAATGAACGGACTATACCAAGCCATACACGGAAATCTGTCCCCATATCAAGACGAGGGCTGGATAGCGATATTTCTTTGTAGCCTTCACTGGATGCGATCTGCATATGCTGTAAATCGCGGGACACATCCATCGTAAC +>IncFIB(pHCM2)_1_AL513384 +CAAATGGTCTCTATGGACGCCTCTGCTGAACTCAAACAGCTGTCTCTGGCCAAAGCCGAAGGGTACGAGGACATAAGGATCTCCGGCGTTCGTCTGGATATGGATAACGACTTCAAAACGTGGGTAGGCATCATCCACGCGTTCGCCAAGCACAAGGTTGTTGGCGACACCGTCACGTTACCGTTCGTCGAGTTCGTCAGGCTCTGTGGCATACCAACGGCCAGATCGTCCGCGAAGTTACGCAAGCGCCTGGACAGTTCTCTAACTCGTATTGCCACAAACACTATCTCATTCCGCAGTAAAGGCTCTGATGAGTATTACGTGACGCACCTTGTGCAGACAGCAAAGTACAGCACAAAGAACGACACGGTCTCGCTGCAGGCTGATCCTAAGATTTTCGAACTCTACCAGTTCGACAAAAAGGTTCTTCTGCAACTCCGGGCAATTAACGAACTCTCCAGAAAAGAATCCGCGCAGGCGCTCTACACCTTCATCGAAAGTTTGCCACCTGACCCGGCACCAATCTCGCTGGCTCGCTTACGCGCCAGACTTAACTTAACCAGCCGCACCATTACCCAGAACGCGACAGTCAGGAAGGCGATGGAGCAGTTGCGTGAGATCGGCTATCTCGATTACACCGAAGTGAAGCGCGGCAGCTCGGTCTACTTCATCATCCACTATAGGCGGCCGAAATTACGCCCAGCACTGCCACCAACTAAAGCTGCGCCTGAAGAACCAGAAGACATCTTGCCTGGTGATGATCAGGAGGACATTATCGATGTTGTTCCTGAAGAAAAAGAGGGTGAGATGGTCATGTTGAGCAAGGAAGAACTGGCGATTCTCGAAGAGCTACGCAAGGCAAAAGCTCGCAAATA +>IncFIB(pQil)_1_JN233705 +GAAGGTTATACAGACATCCGTATTACCGGCCCACGACTTTCGATGGAGACTGACTTCAAGGTGTGGGTTGGCATCATTCTCGCGTTTTCGAAATATGGCTTAAACAGCAGCACCATTGAACTTCCATTCAGCGAGTTTGCTACATTCTGCGGGTTTAGCTCAAAGGACAAAGATAAAGGACTCAGAACGCGCTTGGCCGACTCTCTTATTCGTCTTCGCAGCACAACTATCAAGCTTGCCTCAGAAAAGGATCGGAATGGTGTTGTATCTGGTCTGTTAAGTCGTGGTAAGTGGGACGAAAAAGACGACATCATGGAACTTACCGCCGATGAGTCTCTTTGGGAGCTTTATCAATTCGACCGTCAGGTGCTTCTGCAGATGTTTATAATCCGGCAACTTGCGAACAAAGGGACAGCACAGGCCCTATACACTTTCATTGAGAGCCTTCCTGAGCGACCAATACCACTATCGTTCGCGCGTATTAAACGTCGCCTAATGCTTACCTCACCCAATAACCAGCAGAATCGAGTGATTAACAAGGCTATAGACGAGCTTAAAGCGGTCGGTTATTTAGATGGCGATGTCGTTAAAAAGGATGGTGAATGGCACTTAATCATAACCCGTCGCACGCCTAGGCCAGACATTAAGGCTATGTCTGAAGCCTTAAAAGATGGAGAGTAAAAGCGCCTGACTGTGTTTGTAAAGCGGATATGTGCCGCAGTGACTGCGAGTGTTTGCTG +>IncFIB(K)_1_JN233704 +GTTTGGGGTTGCGATAATGCACGCTGAAATAGGTGGCTCGGCCACGTTTAAACTCGGTGTAATCCAGATAACCAATATCCCGCAGCTGCTCCATCGCCTTACGCACCGTGTGGTTCTGCGTATAGACATTTGAGGTGAGATTCAGCCGGTCACGCATCCGTTTCATGGAAATAGGTGCAGGATTCTGGGGAAGACTTTCGATGTAGGTATAAAGCGCCTGGGCTGATTCCTTGCGCTGCAGGGCGTCAATGGCTTTCAGCCGCAGCAGTACCCTTCTGTCCATGTGGTAAAGCTCAAACAGCTTAGGTTCAGCCTTTATCTCAACGATATCCTCGGTGATGTCATAATAGGCTGACTGCACCAGATGGGTGGTCCATCCTTTGGTCTCGCTCTGGAACTTCAGCGTAACCGAGGCAAGTTTAAACAGGGAATTACTGATGCGATCGCGCATTTTTTTGTTTGAACGACGGGAGTTAAATCCGCACATCTTAACGAATTCGACGAACGACAGTTCCAGGGTGTCACTTTTTACCCCATACTCCGACATGGAGCGAATTATC +>IncFII(Y)_1_CP001049 +TGGCAGGGAACTGGTTCTGCTAAGGTGTTTACTTGGAACCAGAAAAGCAAAAACCCCGATAAACTTCCTCATCTTTGGCGAGGCGAGAAGGTTACCGGGGCCCACTTAAAACTGTATAGAAGCTGTTGCTCTATACAGGGAGTATATGTGCATGTTCAGAAAAGTTCAATACCTTCTGCGCTTGTTACTCCTTCCGTGCAACATAAGTGCGGGAAGGTGTGACTAAC +>IncM1_1_U27345 +GGATGAAAACTATCAGCATCTGAAGAGTAAACTGACAGACGCTGGATGGTTCATAAACAGCAATTATTGAGTTTAACCCGCCGAATATGGCGGGTTTTTTGTGTATACTCAGGTGGTTATAGTCGTTTGTAGTCGGAGGGCTTGTGAGCAGAGTAGTTGAGCGGCAGGTGCATAAGAGTAACCTGGATAAGCAGAAGGATTACAGGAATCGCATCAGAGATACTCATGACCAGCTAAATCTTTATCTGCCCAAAGATGCAAAAAGAATGTTGATAGAGATCACAAAAGTAAAAAAGCTCACTCAGGCGGAGGTTATTGAATTTCTTGTGAAAAGTTATTACGACGGCTTAAAATTTGACGATTCTGAAGAGTGAGGTTACTCTGTAACTGCGGGATCGCAGGTATTGCCCCGCTTAGAAACGCATGATATGTTAAGCGGCGTTTACATAACCTTACGGGGTTATTACAGAATTTAGCACGGGAAGAGCGGCCCGGAGATGTTCCGCTTAGGAGTGGCAGGAGCCACAAAAAGTAAAACCCCCTGATCCTATTTCAGAACTTTGGCCGGCTCGGAATAGAATCAGGGGGTGCAAACTGCCCACTGGCAGAAAGGATTATAGCAAATGCGTACCCTATTGCAATACAGCCCGGCCAATATGTGCAGGGGCTGGTGAATCAAAAGAATCCATACCTACAGCTTTCTGACATTGAGTCAGTAGAAGGTCTTTCGCCGGAGTTC +>IncP1_2_U67194 +CCGATTCGAGCCGGCCGATGCGTTGGGATGAGAACTGCATGGCCGACGCCTGGAGCCGCGTCAGGCATTCCTCGGCCCTTGTGTAGTACCGACCGTTGATTGACCAGTCCAAGTCCTGGCAAAGCTCGTAGAACGTGAAGGAAACCGGCTCTCCGAGCGCGGTGCCGTTCGCGTACTCCAGCACCTGGGCGAATACCAGCTCGTCGTCGTCGGCGCGCAGCTCGATCCCGGTGTAGGTGATCTCCACGTCTTTGTTGACGTGGTAGATCGACTGGCCTTGCAGCGCGGGGCGCGGCACCTTCTTGTTGCGGACGGTGAAGATCGCCGACCGCCCGAAGTCGTTGGGCAGTGCCGCATGTGATCCGGTCCAGGGAGCCAGGTCGAACAGCGAGAGCTGCATGTCCTTGATCTGCTGCTTCGTGTGCTTGAGCAAGGCCGTCTGCTTGGCCTCGCTGACCTTCTCGGCCAGCTCACCGCCGGCCGTTCGCTTCTTGGTCGCCATCGCACTACTCCGTTTGTCCTGGGCCAGCGCGCCGATCTGCTCGGCCATCTTGTTCACGGCGGTGCGCGGTTCGGGCGGCA +>IncP6_1_JF785550 +TGTGAAACAGGCTGATAAGCGTGTCGTTCTTGGGCGTGTAGAGCGGCGCAAACTGCTTGCCGCCGAACTCCACCTTTTCCCCGGCTTCGTGAGCCTTGGCCTTGGCGTACAGCGTCATAAGCTCGGCGCTGCGGTAGTTCCACCGTGGGTCAAGCTCACGGGCCAGCGCGGCGGCCTCGTGGTACATCTGGCCGGTGTGCGTCGCACCTGACAGCAGCAGGAAATTCAGCCGCCAAAACAGGTGCTGCATCCGCTCGCCCTCGGCCACGCCGCCGCGCAGCGCGGCCAGCGTGCGCAAGTCCTCCAGACGATCCCACGCCAGTTGCCGCCCGTTGAGCGTGCGCAGGTTGCCGGTTTGGCCGCCCGGCAGCAGCTTGAACTGGCGACGGTCGGCGCGGGCCTTGCGGTCGGCCTCGATGTCCCAGCGGGCCACCGGCAGTAGCGCCTCGGCCAGATACTCGAAGTTGTACCGGATCGGCTCGCCGTCCGGGCCTTGCTCAACGTGGATGACGCGGCAAACCTCGCCGCTCTTGCTGTTCACCGTATTGACCAGCCGCAGCACGCGGCTTGCATCCTTGGCCGCTGGATCAGCGCCCAGCCCGGCCAGACGGTCGATCAGGTAACGCTGGCAGGCATTCCAGCGTGGCAGCGCCTGACGCGGCAAGGTGCCATCCAGCAGCCACTTTGCTTGCACGCCACGGCCAGAGAAAACGAGGATCGACGGCGGCGGCACGCCTTCGTCGTAGCAGCGGAACATGACAGCGGCGGCCAGTTGCTCGGGGCTGCGCCCCTGCGCCCACGGCTCG +>IncA_1_FJ705807 +GAGAACCAAAGACAAAGACCTGGAGAAACTCGACGTTATCAAAGACTCACCGCAAATGAGCCTGTTTGAGATCATTGAATCTCCGGCCAAGAAAGACGACTACTCCAACACAATCGAGATCTACGATGCGTTACCTAAGTACATTTGGGACCAAAAGCGTGAGCACGAAGACCTGTCCAACGCCGTAGTGACGCGACAATGCTCCATCAGAGGCCAGCAGTTCACGGTGAAGGTGAAACCAGCCATCATCGAGAAGGACGACGGCAGAACCGTGCTGATCTACGCGGGGCAGCGAGAGGAAATCCTTGAGGATGCTCTACGCAAGCTCGCAGTAAACGGGAAGGGCCATATCATAGAAGGCAAGGCTGGGGTCATGTTCACTCTGTACGAACTCCAGAAGGAGCTCTCGAAGATGGG +>IncX5_1_JX193302 +ATGAAAATCAAAACCGCTATGAATATAACTAAGAAAACCAAGATCAGGCACAGGAATGAGTTGAATCAGACTCTTGCTCAATTACCTTTGTCAGCAAAACGTGTCATGTATATGGCTCTGGCTCCTATCGACAGTAAAAAACCTCTGGACAGAGGGCAAACTTTTAGAGTTCGAGCGGATGACCTTGCTGCTATTGCAAATATCACTCCTTCAGTCGCTTATCAACAATTGAAAGATGGCGCAAAAATTTTGGGGGGCAGCAGTTTGTCTCTTACCGGGGATGATGTTGTTGCCTTGGCGAAAGATTTAGAGCTTCCGTATAATCAAAAACATAAGCCCAATGAAATGGATTTATACATTACAGATTACTGCGTTTACTTTAAAAATGAAGGTTATCTTGAACTTCGTTTTACGAGGGCAATAGAGCCTTATATATCTAGTCTAATTGGGAAAAAGAATAAATTTACCACTCAGTTATTAACTTCAAGTTTAAGACTTAGCGGTCAATATTCTTCTGCTCTCTATCAATTAATAAGGAAAAATTATTCAAACTTTAAAAAGAAAAACTCTTTTGTTATTTCTGTTGATGCGTTAAAAGAAGAATTGATAGCCTATACGTTTAACGAAAATGGTGATATTGAATACAAATATCCTGAATTTCCTATTTTCAAAAGAGATGTGCTCAATAAATCTATTTTAGAAATAAAGAAAAAAACAGAAGTGTCATTTATTGGCATTTCAGTATCAGAAAAGATAGGTAGAAAAGTTAGTAAGTTGCAGTTTGAGTTCATAGTTGAAGAGGATGAATTTTCGGGAGATGAAGGTGGTAGTTCTATGGAATTAAGTGAAGAGGATGCTACTTTTCTTGAAGAGTTCGATAAAAAAGTGCCACCAAAAAAG AAATGA +>IncX5_2_MF062700 +TGATCCAAAAAAAGAAATGAGAATGGGGCAGACCTTTAAAATTCGGGCTGATATGTACGCAAAGATAGCCGGAATACATCCTTCTGTTGCTTATAAGCAAGTCAAGGAAGGTGCTGAATTGTTAAATGTCAGTAAACTTTCCCTTACGGGGAATGATATGAAGGAATTAGCAAAGGAACTTGGTCTTCCAAATTCAAAAAACATCGACCGCCTTGACTTATCGATTACTGATTATTGTGCATATAACCAAAATGAGGGATTTGTAATTCTAAGATTTGGATACACTATCACGCCTTATATATCAAGATTAATTGGGGCGGAAAATAAATTCACAACACAACTAATTGCGTCCTCATTAAAATTGAGAGGGGAGTATTCGTGGTCATTGTATCAGTTAATTAGGAAGAATTACTCAACGTTTAAAGGGAAAAATTCATTTAGCCTATCTCTGGAAGAGTTGAAGGATGAACTTATTGCTTACAATATTGATGATAATGGAGATATTATATATAAGTATCCAGAGTACCCTATATTCAAGCGAGAGGTAATAAATAAGGCCATCAAAGAAATAAAAGA +>IncX6_1_KU302800 +ATGCATGATCCTAACGAGATAGAGCGAGAACGCAACTTGAAAACCCTACGCCCCCGTAAACATGAAATTGACTTCTTCATCGCTGATGAAGTGGAGTTATCCGGCTTTCGTGACGAGATGGCCAGTATGGAGCATCCTTTTTTTGCCCTAAAAGGAGGGGACGATAAAGTCAGAGAGTATGTAAGCGGTAACGTGATTCTGACCGTAAGGCCGTCCGTGGGGATAGGTCTTGCGACAGTTTTTGATAAAGATATCTGGATTTATGCAATATCGAAACTGCAAGAAGCCATCAATAATGGGGAGGGAACAAGCCGTGAAGTTTATTTCACTCCTTATGATTTTTTTGTTACGACTAATAGAGATAAGGGAGGTAAATCATATAAGGAATTAGAGAAAGGGCTGGATAGATTGAAAGGAACTACTATTAAAACCAATATACTGTATTCTGAGCAAAAAAATGAATTGGCAGGTTTTGGTCTAATCGATGACTGGAAATTGAATGTAGAAAAGAAAGGCAAGCTAGATATAGGCATGGTTATGATAAGATTACCTGAATGGCTTTATCAGGCATTGCAAAAAAAGAAAATTTTAAAAATAAGCCCTGATTATTTCCGCATTCGTAAGGCCATTGACAGACGCATTTATGAGATTGCCCGTAAACATTGTGGTAATCAGGGTGAGTTCCAGATTAGCCTTGAAAAGCTACATTTGAAAACAGGAAGCTCCGCTCTGCTAAAAATGTTCCGGCATAACGTCAAGCAGCTTGCTAAGACCAACGACTTACCTGATTACAGCATCCAGTATGATCTTGAACGCGATATGGTAATGTTTACAAATCGCAATTTAAAACCGGAACAAGTTGAAAAGGAGCAAAAGCGTGAACAGGGCAAGCGTGAAATTCATAAACTCAAAAATCAATTAAATGAAGGAAAAAATGAAAAGGGAAAACAATCAGGCAGGAAGTACGTTGTAGATATTTGTAATCCGGGTGAACCAGATAGCGAAATCCCACCGGGATTCAGAGGGTAA +>IncX7 +ATGAGCATGAATAAAACATCACTTTCGCGGTTGACCAAAGTTCGACATAGGAATGAGTTAAATTCAACTCTTTCTACATTGCCGATGGCTGCCAAAAAGGTTTTATTTTTGGCTATGAGTCAAATCAATTCAAAAAATGAATTTGATGATGACCATATATTTTATGTTAATGCTTCCGATTATACTAAGTGGGTTAATGTTAAAGCTGATGCTGCTTATCTTGCGTTAAAAGATGGTGCAAATATATTGGATAGTGTTGTCTTGAAATTAAGGAATGATGAAATTCTAGATTTAAGTAGTGAATTAAATCTTCCATTTACCTCTAAAAATGTACCTGATTCATTGAACTTGAGCCTTACGGAATTTTCTGCATATCATAAAAATGAGGGGCGAGTCGGTATAAAATTCACCAACACAGCGAAAAGATTTTTATGTAAATTAGTTGGATCTGAAAAAAGATACACGACTCAAGTTCTTTTGTCCGTAGTAAGACTTTCCAGTGTAAACGCATCTTCTTTATACCAATTAATTAGGAAGATACATAGCAATAATCCTAGAGTAATGTCTTTTGATATGTCTATCGATGAATTAAAAGAAGAACTTAATTTATACACTGTAGATGAACATGGCAATAAAGAATATAAATATCCCGAATTTCCAGCTTTTAAAAGGGATGTGTTAAATAAGTCGGTTAAAGAGATTACAAAGCATACAGAGATTAAAGAGCTAAGTTTTGAAGTCTCTGGAAAGATAGGAAGGAAAGTCAATACATTGAAATTCACGTATTCATTAGAATCTACAGAGTTACAAAATGAAGATAGTGAATTTTTGGATATGTTTGATAAAAAATTTCCGTCGGGTAAATGA +>IncX8_1_AM942760 +ATGAGAGTAACGATGAATAAAAAATCACTATCTCGGTTAACTAAAGTCAGACATAGAAATGATTTGAATTTAACTCTTTCTGCATTGCCAATAGTTGCAAAAAAAGTTTTATTTTTAGCCATGAGTCAAATAAATTCAAAAAACGAATTTGATGATGATCACATATTTTATGTAAGTGCTAGTGATTATGTTCAATGGGCTAATGTTAAAGCAAATGCAGCATACGCAGCTTTAAAAGAGGGGGCTGCTATTTTGGATAGTGTATTATTAAAGCTAAATAATGAGGATATTTTAAATCTTAAAAATGAGTTAAAGCTACCTTTTACAAAAAAAAATATTCCAGATTCAATGAACCTGAGTTTGACAGAGTTTTCTGTTTATTATAACGATGAGGGGCGAATTGGAATTAAATTTACAAATTCAGCAAAAAGATTTTTATGTAATTTGGTAGGTGTGGAAAAAAAATATACTACACAAGTTTTATTGTCTGTTGTAAGTTTATCTAGCGTTAATGCTGCATCTTTATATCAGTTAATTAGAAAACATTATAGTGCTAATTCTAGGTTAGGTTTTTTTGATATTTCAATTGATGAATTAAAAGATGAATTAAATCTTTATTCAATTGATGAAGATGGTAATAAAGAATATAAATACCCTGATTTTCCTATTTTCAAAAGAGATGTTTTAAATAAATCAGTTAAGGAAATAATTAAATTAACAGAAGTTAAAAACTTAAAGTTTGAGGTTTCGGGAAAACTCGGAAGAAAAGTTGACCGTTTGAAATTTAGTTATTCTTTAGATTCAGTTAATTTAACTGATGATGAACGTGAGTTTTTAGATATGTTTGATAAAAACTTTTCATCTTAG +>IncX9 +TCTAGACAGATGTTCAAAATCACAGCCAAAGAGTATGCTTCTATTGCTGATGTAGATATTTCTGTCGCATATAAGCAAATGAAAGATGGTGCTGAACAGTTACAGCTAAGTTTAATTAGAATTCCTAAAAGCCAATTGCTGCGCGCTGATATGAAGGCTGCCAGTCAAAGTGATGCCGTATGGAAATTGAATTTAACTGATTTTTGTTCTTATTCTGATAAAGAAAGTAGCATAATACTTAGTTTTGGTAGGAGTATTGAACCATATATATGCCAATTAAAAGATAATTATACTACTCAAGTTTTGTTCTCTGCTGTAAGACTATCTGATACTAATGCTAGTTCATTATATCAGTTGATCAGGAAATATATTAGTGCTGGGAGTGATAGTTTTTTTGATATTGAAATAAATGAATTGAAGGATGAACTATTACTCTATAGAGAGGAAAATGGAGAAAAGGTTTATTTATATCCTGATTTCAAAATTTTTAATAGGGCTTTTCTTAAAAAGAATGTTTCTGTTATAAAAGAATCTACAGAGATTACCGAGCTCGATGTTAAGGTTGTCGCAAAAGTTGATAGGAAGGCATCAAAGCTAAGGTTTTCCTATAAAGTTAAAAAAGAAAGCGAAAGTCTGGATACCAGAATACCATATGGTTTCAGAGGGTAA +>p0111_1_AP010962 +ATGCTGGAAGAAAATAAAGGCTTCCTTAGCGTTGAAGAAGTTGCAGGAAATACAGGAGAAATCCACAGCCTGAAACCCAATAACAATAGCACTATACAACCCATTGCTTTGTTGCGCTTAGGTGTGTTTGTGCCAACCTTAAAATCTACCAATGTGGCACTACGTCGCGGATCGTCAGTTACTACAAACACAACGAACGCAACCGAAGAACTATCAAGCCTCAAAATTGTTGAGCAGGAAGGCTATGAGGGAATTGAAATTCATGGTCCACGCCTGGATATGGATACTGATTTTAAGGTGTGGGTGGGCATAACCTCCGCGTTGTTTGACTACGCACCTGATGATGACGGCATAATCACCCTGCCATTCTCCGAGTTTGCCGATCGATGCGGCTATCCACGTAAGCGCCTTTCAAAGGCGTTCCGTAAAAGTATTGATGACTCTCTGACACGCATTCAGCAGACAGTTGTCAAATTCCGCTTCCCGGCGGCAAAAGGTCATCTCAATAACATTAACGTCAACTTGTTGGCATATAGCAGCCTGAATACCGAGCTTGATGTTATCGAGATCCAGCCGCAGAAACAGCTATCTGAACTTTACTATGTTGACTATAAGCGAATCCTGAAGCTGAAGATGCTGGATAAGCTCGGGCGCAAAGAGACGGCCAAGGTACTGTATACATTCTTTGAGGCTCTACCCGCCAACCCGGCACCTGTCAGCATTGAGCGCCTTAGAGCAAGGCTTAATCTCAAATCATCCGTTAGCGTGCAAAATAGCGTTATCAGAAAAGCCATGAAAGATTTGGAAGCTATTGAATATCTTAAATTTTCAGAGATAAAAAACGGCAGGAAAATCGGCTTTCAGATCCATAAGCGCAATCCATAA +>IncFIB(pECLA)_1_CP001919 +GTTTCGGATTACGGTAATGCACGCTGAAGTAGGTGGCCCGGCCGCGTTTGAATTCGGTGTAATCCAGATAGCCGATATCCTTCAGCTGCGCCATGGCTTTGCGCACCGTGTGGTTCTGCGTGTAGAGGTTAGACGTCAGGTTGAGTCTGTCTCGCATACGCTTCATGGAGATGGGGGCCGGATTCTGTGGCAGACTTTCAATGTAGGTATAGAGTGCCTGTGCGGACTCCTTGCGCTGCAGGGCATCAATGGCTTTCAGACGCAACAGGACCCGCCTGTCCATCTGATAAAGCTCAAAGAGCTTGGGCTCTGCCCTGATCTCCACGACATCGGCAGTGATGTCGTAATAGGCAGACTGAACCAGGTGCGTAGTCCACCCTTTCGTTTCACTCTGAAACTTGAGGGTTACGGATGCCAGCTTGAACAGGGAGTTGCTTATCCTGTCACGCATTTTCTTGTTAGAGCGCCGGGAGTCAAAGCCACACATTTTAACAAACTCAACAAAAGACAGCTTGAGCGTGTCATCCTTAACGCCAAAATCATACATTGAACGGATGATT +>IncFIB(pLF82-PhagePlasmid)_1_CU638872 +CAAATGGTCTCTATGGATGCCTCTGCTGAACTCAAACAGCTGTCTCTGGCAAAAGCCGAAGGGTACGAAGACATAAGGATCTCTGGCCTTCGGCTTGATATGGATAACGACTTTAAAACGTGGGTGGGAATAATCCACGCGTTTGCCAAACACAAGGTCGTTGGCGATACTGTCACGTTGCCGTTCGTTGAGTTTGTAAGGCTGTGTGGCATTCCGACCGCCAGGTCATCAGCGAAGTTACGCAAACGCCTGGACAGTTCGCTAAGCCGTATTGCCACAAATACCATCTCGTTCCGTAGCAAAGGCTCTGATGAGTTTTACGTAACGCATCTTGTGCAAACGGCAAAATATAGTGTCAAGCACGATACGGTCGAACTGAAAGCAGATCCCAAGATTTTCGAACTCTACCAGTTCGACAAAAAGGTTCTTCTGCAACTCCGGGCTATAAACGAACTCTCAAGAAAAGAATCCGCTCAGGCGCTTTATACTTTTATTGAAAGTTTGCCGCCTGATCCGGCACCAATATCACTAGCCCGTTTACGCGCCAGACTTAATCTGAC +>IncFIB(pKPHS1)_1_CP003223 +ATGCTGTCAGCGGTAAACGATATGCTGTCAGCGGTACGGTATATGCTGCCAACGGTTTTGTGTATGCTATCAGCGGTAATTGACGTATGCTGTCAGCGGTTAGAACCAAAAGGTATCCACATGTCCACAAAAAATAAAAAAGAGAGTGAAATCAAAGAAATACCTGAGGATAACGAAATTCTTGAGGAAGATGCTCTCAATTTGTACACAGGTGACTTAGTTCCTAACAGCAACAATACGGTGCAGCCAATCGCTTTAATGCGCCTTGGCCTCTTTGTTCCAACGCTCAAGGGAACGAAGAATAGCTCTCGCAACAAGTCCAACATGATCGACGCATCCAGGGAGCTTGTCCAGCTTGAAGTCGCGCGGTCAGAGGGTTATTCAAACATTAAAATCACCGGTCCGCGGCTGGATATGGATCATGACTTCAAAACCTGGGTTGGTGTTGTTCGCTCTCTGGCTGAATACGGCGAGCCAACAGGGCGCGTAGAGCTGAGCATCACGAAGTTCGCCAAGTTCTGCGGCTACCCGTCCTCGCAGATCCGCAAGACCCTGCGAGA +>IncFIB(pCTU1)_1_FN543094 +CCGGCGAGGTGGTCACGCTGGTTCCCAACCGTAACAACACGGTGCAGCCGGTCGCGCTGATGCGCCTTGGCCTGTTTGTACCGACGCTGAAGTCCACCGCCCGCGGCCGAAAAGGCCAGATGTCCTCAATGGACGTGACGGAAGAGCTTAAGCAGCTTTCGCTGGTAAAATCGGAAGGCTACGAAAATATCAAGATAACCGGCGCCCGTCTGGACATGGACAATGATTTTAAAACCTGGGTCGGGATCATTCATGCCTTCGCCAAATATAATGTCCTTGGCGACAGCGTCACGCTGCCTTTTGTGGAGTTCGTGAAGCTGTGCGGTATTCCTTCGGCCCGTTCATCTGCAAAGCTCCGTAAGCGACTTGATGCCTCGCTGACCCGTATCGCCACCAACACCATCTCCTTCAGTAACAAAGAAGGAGAGTACTACGTCACGCACCTTGTGCAGTCTGCCAAGTACAGCGCCAAAAAGGATGAGGTGACGCTGCAGGCCGATCCAAAAATCTTCGAGCTCTATCAGTTCGACAAGAAAGTCCTGCTGCAGCTGCGCGCCATTAATGAACTGTCGCGTAAAGAATCCGCGCAGGCGCTGTATACGTTTATTGAAAGCCTGCCGCCCAACCCCGCCCCGATCTCGCTTGCCCGTCTGCGCGCACGTCTGAATCTTACGTCCCGCACCATCACGCAAAACTCCACGGTGCGTAAAGCCATGGAGCAGCTCAAAGAGATCGGTTATCTGGATTACACCGAAATCAAACGCGGGCGGGTGGTGTACTTTCATATCCACTACAGAAGGCCAAAACTT +>IncFIB(pCTU3)_1_FN543096 +ATGGAAAATTCTGAAGCGCAGCAAAGTCCTTTTGCGATCAAAAAGAAAGAGTCAGGGGAGAGTTATGAACTGACGCCGAACAGTAACAAAACTGTTCAGCCTGTGGCTTTGTTACGCCTCAGTGTGTTCACTCCGGTATCTCCAAAAGAGAAGGGAAAACGTGATTTTCTTATTGATGCGTCGGAAGAACTTTCAAGCCTGGAAGTTGCGCGGCAGGAAGGGTACACCAATATCAAAATCCAGGGGGCTAAGCTCGGTATGTCAACCGACTTTAAGACTTGGATCGGGATTATTTCAGCGTTCTCCAAGTATGGTTATACCTCCGACAAAATTTGTCTACCTTTCTCAGAGTTCGCAAGGATGTGCGGTCTGAGACCAACCGACATCAATGGCCGAGCCAGAAATCGATTAAGCGAATCTCTTTTTAACCTATCTAGCGTGACTCTTTCGTTTCGCAGCCAGGATGGCAAGCGCAGCCTCGTAACCCACCTTGTTCAACGTGCGCAACTTGATATGGAAACGAATGAAGTTGAGATAGTTGGAGATCCGAGTCTATGGGAGCTATATCGCTATGATCATAAGGTTTTACTCGGACTGAAAGCGCTGTCAGCATTATCCCGTAAGGAATCAGCCCCCAATCCCTTTATGTCTATTTCGAAAGTATGCCTGCCGGTACGTTGTATGTCTCCATGA +>IncFIB(pENTE01)_1_CP000654 +GAATGAGAATCTAACCTCAGTCCACTGGTCAAACCTGCCTGCAGATGAGCAAGTCCAGTTCTGGCAAGATATCGATGCCGGAAAACAGGATGGCTTTCTTGTCGCGTCCGTTAAAACGCTGACCCGTCGTCAGCGCGGCGACCATTCAACGAAACCCAAGTGTGAAAATCCAGCCTGGTATCGCCCTGAGCATTATAAAAAGCTGTCAGGGGAACTCGATCATGCCTATAACCGACTGGTACAGAAAGATAAAGAAACCGGTCAGGTCAGCCTGCGCATGCACGTCTCGCGGCATCCTTTGTATGTTGCCGGCCGCCGTAAAGCCGGTCGCAAGTACGGCTTTCGTCCGGAGCGTCAGCGTCTCCTGGATGCGCTCTGGCCTGTGCTTATCAGCTTCTGCGATGCCGGGAAACACACCGTCGGTATGTGTATTTCGCGTCTGGCTAAAGAACTGAGCGCAAAGGACAGCAAGGGCAATGTTATTCCTGAAACAGAGGTGACGGTGTCACGCCTTTCACGGCTTATTGAGGAACAGGTTCGCTTTGGTGTACTGGGTCTGG +>IncFIB(pB171)_1_AB024946 +GGACAAGGACAATCTGGACATAAAAAAGCTGTTTGAAGAGGTGGATAAATCCTCCGGTGAAGTCGTAAATCTTACACCTAATGCCAGTAATACAGTGCAGCCTGTGGCACTGATGCGGCTTGGGGTGTTTGTTCCCACGCTTAAATCACTGAAGAACAGCAAAAAAAACACGCTTTCCCGGACTGATGCGACGGAAGAAGTCACGCGCCTGTCTCTCGCCAGAGCCGAAGGTTTTGATAAGGTGGAGATCACCGGCCCGCGTCTGGATATGGATAATGACTTCAACACCTGGGTAGGGGTGATTCATTCCTTTGCCCGCCATAAGGTTATCGGCGATAAAGTGGAGCTGCCGTTTGTCGAGTTCGCCAAACTCTGCGGGATCCCCTCCAGTCAGTCATCACGTAAGCTTCGTGAACGTATAAGCCCCTCACTCAAACGTATCGCGGGTACCGTGATCTCATTTTCCCGCACAACGGAAAAGCACACCAAAGAGTACATCACACATCTGGTGCAGTCGGCTTACTATGATACGGAAAAGGATATCGTCCAGCTGCAGGCCGATCCACGCCTGTTTGAGCTCTACCAGTTTGACCGGAAAGTGCTGCTGCAACTCAAGGCCATCAATGCCCTGAAGCGCCGGGAG +>IncFIB(pENTAS01)_1_CP003027 +GTTTTGAATTACGATAATGCACACTGAAGTATGTGGAGCGGCCACGCTTGAACTCGGTGTAATCCAGATAACCGATATCCTTCAGCTGTGTCATGGCTTTGCGAACCGTGTGATTCTGCGTATAGACGTTTGACGTCAGATTCAGCCTGTCCCGCATGCGTTTCATGGAAATAGGCGCAGGATTCTGTGGGAGGCTTTCAATGTAGGTGTAGAGTGCCTGAGCAGACTCCTTGCGCTGCAGGGCATCGATGGCTTTCAGTCGCAACAGCACCCGCCTGTCCATGTGATACAGCTCGAAGAGCTTAGGCTCAGCCTTGATCTCAACAACATCCTCGTTTATGTCGTAATAGGCAGACTGTACCAGGTGTGTCGTCCACCCTTTCGTCTCGCTCTGAAATTTGAGGGTAACTGAGGCCAGTTTAAACAGTGAATTACTGATTCGATCGCGCATTTTCTTGTTCGAACGGCGGGAATCGAAACCACACATCTTCACGAATTCGACAAAGGATAACTCCAGTGTGTCATTTTTCACCCCGCACTCAGACATCGAGCGAATGATC +>IncFII(pHN7A8)_1_JN232517 +CACACCATCCTGCACTTATGTTGCACAGAAGGAGTGAGCACAGAAAGAAGTCTTGAACTTTTCCGGGCATATAACTATACTCCCCGCATAGAGCAACAGCTTCTATGCAGTTTCTTGTTAGCCCCGGTAATCTTTCTGACTCGCCAAAGTTAAAGAAGATTATCGGGGTTTTCGCTTTTCTGGCTCCTGTACATCCACATCAGAACCAGTTCCCTGCCACCTTATGGCGTGGCCAGCCACAAAATTCCTTAAACGATCAG +>IncFII(pRSB107)_1_AJ851089 +CACACCATCCTGCACTTATGTTGCACAGAAGGAGTGAGCACAGAAAGAAGTCTTGAACTTTTCCGGTCATATAACTATACTCCCCGCATAGAGCAACAGCTTCTATGCAGTTTCTTGTTAGCCCCGGTAATCTTCTCTTAGTCGCCAAACCTGGTGAAGATTATCGGGGTTTTTGCTTTTCTGGCTCCTGTAGATCCACATCAGAACCAGTTCCCTGCCACCTTACGGCGTGGCCAGCCACAAAATTCCTTAAACGATCAG +>IncFII(pSE11)_1_AP009242 +CACACCATCCTGCACTTACAATGCGCAGAAGGAGTGAGCACAGAAAGAAGTCTTGAACTTTTCCGGGCATATAACTATACTCCCCGCATAGCTGAATTGTTGGCTATGCGGTTTTATGGGGCCCCGGTAATCTTCTCTTAGTCGCCAAACTTCTCGAAGATTATCGGGGTTTTTGCTTTTCTGGCTCCTGTACAACATCCACATCAGAACCAGTTCCCTGCCACCTTACGGCGTGGCCAGCCATAAAATTCCTTAAACGATCAG +>IncFII(pENTA)_1_CP003027 +GAGTGACATTCCATTATCCGTCCACTGGTCTGAACTGCCGGAAGATGAACAGATCCGTTTCTGGCAGGATATTGATGCCGGAACACAGGACAACTTCCTCGTTGCACCGGTTAAAAAACAGACGCGCCGCACGCGCGGGGACCATTCCACAAAAGCCAAGTGCGAATTTCCAGTCTGGTGTCGCCCGGCGCACTATAAAAAGCTTTCCGGAGAACTGGGTCATGCCTACAACCGGCTTGTGATGTTTGACAAGGTGACTGGAAAGCCCAGACTGCGCATCCACATCTCGCGTCATCCCCTTTATGTGACCGGCCGCCGAAAGGCGGGGCGTAAATATGGCTTCCGCCCGGAACGCCAGCGTCTGCTTGATGCTCTCTGGCCACTGCTCATCAGCTTCTGTGATGGCGGTAAGCACACTGTGGGTATGTGTATCTCGCGCCTGGCGAAAGAACTTAGCGCCAAAGACGCTAAGGGCAATGTTATTCCCGAAACAGAAGTGACCGTGTCACGGCTTTCTCGCCTCATTGAAGAACAGGTCCGGTTTGGCGTTCTCGGTCTTG +>IncFII(pECLA)_1_CP001919 +GAATGACAATCAGATTTCTGTTCACTGGTCAGATCTACCGAAAGATGAGCTAACCCGTTTCTGCCAGGATGTCGATGCCGGCACTCAGGGTAATTTCCTCATTGCACCGGTCAAAAAACTGACCCGCCGCAAACGCGGTGAGCATTCCACAAAAGCCAAATGTGAGAACCCGGCCTGGTATCGCCCGGAGCATTATAAAAAGCTCTCCGGACAGCTCGGTCATGCCTACAATCGCCTGGTGAAAAAAGACAAAGAAACCGGGCAGGTCAGCCTGCGCATGCATGTTTCTCGTCACCCTCTCTATGTCGCCGGCCGCCGTAAGGCGGGACGTAAATATGGCTTCCGTCCGGAACGTCAGCGCCTGCTCGATGCGCTCTGGCCAGTGCTCATCAGCTTCTGTGATGCCGGCAAGCATACCGTCGGCATGTGTATCTCCCGTCTTGCAAAAGAACTCAGTGCAAAGGACGCAAAAGGCAATGTCATTCCTGAAACGGAGGTGACGGTGTCACGCCTTTCACGGCTTATTGAGGAACAGGTACGGTTTGGCGTTCTGGGCCTCGCAGAAGAACGCGCCTGGGATCGTGAATCCCGCACCTGGTTGCCAACGTATGTCTATATAACCCCCGTGGGATTCCAGATGCTGGGCGTCGATATGGACAAGCTGTTTAAAGAGCAGGAGAAGAAGCTCCGTCAGAGCGCCGAGCGTGAGCAGCTGATCCGGGAAGGAGTGATGAGCGAACATGATGA +>IncFII(pseudo) +GGGGGTTTTTGCATTCAAGGCCCGCTGTTCTGGTACCTTTTCCCTTGAGCATTTCAGGATATGCCCATCCAAATCAACCATGCCGCCTAAAGCCACATAGCCCTTTATCCTTTTGCTTGTCAGTCTGTTAGAAAGTAGACCTTCAGCATAATCACCTGCAAATATTACCCGTTTTTTATCCGCTTGCAACAACTGGATCCCTGTCTAACGATCAATATCACACCTAAAACAAAAAATATCCTTATAAATCATAGAATATGACGATGATTATGAAGGATCGCGTCTAAGTCCCTTCTGCTATTATCAAAATACCTACTTTTTATAAATGTCACCATTAGATATTTATCCTAATCAATCTTTAGTTAACGCCAATAAAAACACCCAAACAAG +>IncFII(pCTU2)_1_FN543095 +GAGTAGTATTCCTTTTTGCGTTCACGAGCTGCCTGGCGCTTGGCTTGCATCCTGGCGAGTCCGGCCATCGCTTTGCGCTTCCAGTTTTCAACCCTGATAGCAATGAGGCGGCTGTCCCATGAGGTAATCATTTCCTCAGGGTCGGCCTTAAGTAGCCTGGCGCGTTCACGGTACACCTGTTTGAGCGGTATGCCGAGGATAGCGAAGAAATCCTCTGTTACCTCGATATGCTTACACGCACAACGGGCATCATAGGGATTGAACTGCGCTTTCTCGGTGATAATAGCATTGAGCCAGAAGAGGCGATCACATCCACGGCTGGCACGTGAAATCGACTTATGACCTGCGTCACTGTACGTTGCCAGACCGGCACGTTCAGCCAGCGTTTCAAGGTTATGCCGGGTCTGCCAGTCTCTTAAATCGAGATCGTCGAGGATAGCCAGCATCAGCTCGCATAACGTTTCGATACCGTATTTATTGGCCTCATTGACCCAGTACCGGTTATGCCGGATGCGTCTGCGGAGCTCGGACTTGATTTTGATGCGCCCGGCAACAGTCGCAAGCGCCTTAAGCCACC +>IncFII(pYVa12790)_1_AY150843 +AAAACTGAAAAGAAAAGAACGCTTCGGAAACGGGGTGAACACTCAACTGAGTGTAAATGTCCTAATCCATTCTTTAGTCGCCCAGAGCATTACAAGCCATTAGCTGGTGAGCTGGGCCATGCTTATCGTCGATTAACTCAGAAAGACAAAAAAACCGGCAAAGTATCTCTCCGAATTCGTATATCCCGGCATCCATATTTTGTGTGGGCGCGTAAAGCTGTTGGCCGTCAACGCGATTTTAGACCCGTTCGTGAACAACTGCTCGATGCACTCTTTGTATTACTGGTTAGCTGTGTAGATCGAGCAACCCATATTGTTACGATGAACGAGAGCCGTTTAGCTGCGGAGCTTAGCCCTAAAGATGATAATGGTAACGTCATTCCTGCAACGGCCGTGACAGTGACGCGAATTTGTCGGTTGTTACAAGAGCTGAATAAATTTGGCCTCATCGCATTACCTGAAGGTGTTCAATGGGATGCTTATAATAAGCAGTTCTTCCCGAAGCATGTCATTTTGACTGAACAGGCTTGGAAACTGATCGGGGTAAATCTCGATAAGTTATATGCGGAGCAGGAAGAACGGTTACAGGCCGAGATAGACGGAGTTTTACAACCAGGGGAAGACGTTTCTGTGAAAACAGCGCGTAAACGTTGGTATGACCGTATGCGACATGC +>IncFII(pMET)_1_EU383016 +GAGTAGTATTCCTGTTTACGCTGGCGAGCTACTTCACGCTTCGCCTTCATCCTGGCTAACCCGGCAGCGGCCTTGCGCGTCCAGTTTTCAACCCTGATTGCGATTAACCGCACATCCCCGGATGATATGATTTCATTCGGGTCGGCCTTAAGTAGCCTGGCGCGTTCCCGGTAGACCTGTTTCAGCGGAACGCCGAGAATGGCAAAGAAATCCTCTGTTACCTCAATGTGCTTACAGGCACAACGGGCGTCATAAGGATTGAAGGCTGCTTTCTCTGTGATAATCGCATCCAGCCAGACCAGGCGATCGCATCCGTTACTCGCACGGGAGACAGATTTATTTCCGGCATCACTGCGAGTAGACAAACCTGCGCGATCAGAAAGCGTCTCCAGGTTATGCCGGGTTTGCCAGTCTCTTAAATCCAGATCGTCAAAGATGGCCAGCATCAGCTCGCAGAGTGTTTCGATACCGTATTTATTGGCCTCGTTGACCCAATACTTGTTGTGCCGGATACGGCGCCGAAGTTCGTTTTTAATTTTGATACGCCCGGCTTCGGTCGCCAGCGACTTAATCCACC +>IncFII(pCRY) +TCAGGCAAAGGTTGGGGAGTAGTATTCCTGTTTGCGCTGGCGAGCTGCGTCACGCCTCGCTTTCATCCTGGCTAATCCGGCTGCGGCCTTGCGCGTCCAGTTTTCAACCTTGATAGCGATTAACCGGACATCCCCGGAGGATATGATTTCTTCCGGGTTGGCCTTAAGCAGCCTGGCGCGTTCCCGGTAAACCTGTTTTAGCGGGATGCCGAGAATGGCGAAGAAATCCTCTGTAACCTCGATGTGCTTGCAGGCGCAGCGGGCGTCATAAGGATTGAAGGGGGCTTTTTCCGAGATGATGGCATTAAGCCAGGAGAGGCGATCACATCCCCGGCTGGCACGAGAAATCGACTTGTGACCCGCATCACTGCGCGTCGTCAGCCCGGCACGGTCGGCCAGCGTTTCAAGGTTATGTATGGTTTGCCAGTCCCTTAAATCCAGATCGTCAAGGATGGCCAACATCAGCTCGCAAAGAGCCTCAAGCCCGAACTTGTTCGCTTCATTGACCCAATACTTGTTGTGCCGGATGCGGCGCCGAAGTTCGTTTTTGATTTTGATACGCCCGGCTTCGGTCGCCAGCGACTTAATCCACC +>IncFII(Serratia) +GGGGTTTTGCTTTTGTATCTCCCGGCTAACTGCGCCGAAAGTCCCTAAATTCATTTTTACCCCCGGAAACCACAAATTGGGAGCACGTGCAAACTCTAGCACACTCAATCGAGCTTCGCATTAGATCTCGCATCGGTCGAGCGCTTTTTGTTCCGTATTGGATCTAGATCCCCAAAGGATCCTTTTGTAGCGTTCTGATTCTACTCGTAACCCCCTGTACGTCAAATTAAAACACTAAAACACGCCAAACAAACGATCGCCAACGCGGCGTAAGCCCC +>IncFII(pCoo)_1_CR942285 +CACACCATCCTGCACTTACAATGCGCAGAAGGAGTGTGCACAGAAAGAAGTCTTGAACTTTTCCAGGCATATAACTATACTCCCCGCATAGCTGAATTGTTGGCTATACGGTATTTAGATGGCCCCGGTAATCTTTCTGTACTCGCCAAAGTTAGAGAAGATTATCGGGGTTTTCACTTTTCTGGCTCCTGTACATCCACATCAGAACCAGTTCCATGCCACCTTATGGCGTGGCCAGCCACAAAATTCCTTAAACGATCAG +>IncFII(p96A)_1_JQ418521 +GTGACTGATGTTACACATTACCTACAGGTCAAAAATCCTAACCCTCAGTTCATCGAACCTGCGGACAAGGAGACTCTTTCCTTCTGCCGGAAGATGATGGAAAAAGCTCAGGGGTTCTCTGAACGCTTTGAGTTTCTTGTCCACGTTGCGTTTTCGCGTTCGATTGGAAAGCGTCGGCGTAAACCGCCTGTTTTACGTTGTCGGGCGATTGACGCCCTGATGCAGGGCATGTGTTTTCACTATGACCCCCTAGCGGGTAATTTCGGACGTGTTCAGTGTTCGACAACCACCCTTGCGATAGAGTGTGGACTGGCAACAGAATCCAGAAAGGATAAGCTGTCCATCACACGGGCAACCCGCGCCCTGCGTTCCCTTGCCAGTGATTTTGGACTCATTACCTATGATACAGAGTTTGATCCGGAAATAGGGTGCAACATACCGTCCAATATCCAGTTTACCCCGGCGCTGTTTGAGACTCTTGGTATCTCGATGGCGTCACTGGAGGCTATCCGGAAGAATCGTGCGGAATGGCAG +>IncFII(SARC14)_1_JQ418540 +GTGCATATGCGCACGAATGCTGGCCGTGAGCGCGATTTCCGACAGGAATTCCAGAATCTTCTTAATGCAATGGGGTCCCTGCTGGTCAGCGGTTGCGACATTGCCACGTTTAACGTCGCCCTCAACAGCTCACAGATATGCAAGGCGTTAAGTCCCAAAGATTCCCGGGGTGAGGTAATACCTGGTGAAGAGGTCACGCCTTCCCGCATTTGCCGCGCACTCGATCTGTTAGAAAATTACGGCCTTATCGAGCCGTACATGCGTCGTCTGGACCCGTACACAAAAACATATCTCCCACGTCATGTCACTTTAACAGAGCAGTTTTTCAGGCTCCTCCAGGTCAATCTCGATCTGCTGTACAAAGAGCGTGAAGAACGTCTGCGCGCGCTGGCTGAGGGGATTCTTGCCCCTGGCGAAGTGATGTCCGTAAAAGCGGCCCGACAGC +>IncFII(p14)_1_JQ418538 +TTTGAAGAATTCTGATGGCTGGCCACGCCGTAAGGTGGCAGGGAACTGGTTCTGATGAGGTGTCTACCTGGAGCCAGAAAAGCAAAAACCCCGAAAATCTTCACCAGGTTTGGCGACTAAGAGAAGATTATCGGGGCCCTAACTAAACCGTACAGAAGCTGTTGCTCTGTACGGGGAGTATAGTTTTATGCTCAGAAAACTGCAATACCTGTTTCTGTGCCATTTGCTCCTTCCGTGCAACATAAGTGCGGGAAGGTGTGAC +>IncFII(29)_1_CP003035 +CACACCATCCTGCACTTACAATGCGCAGAAGGAGCGAGCACAGAAAGAAGTCTTGAACTTTTCCGGGCATATGACTATACTCCCCGCATAGCTGAATTGTTGGCTATACGGTTTCTTGTTAGCCCCGGTAATCTTCTTCGTCGCCAAACATAGAAAGATTATCGGGGTTTTTGCTTTTCTGGCTCCTGTAAATCCACATCAGAACCAGTTCCCTGCCACCTTACGGCGTGGCCAGCCACAAAATTCCTTAAACGATCAG +>IncFII(pSFO)_1_AF401292 +CTGATCGTTTAAGGAATTTTGTGGCTGGCCACGCCATAAGGTGGCAGGGAACTGGTTCTGATGTGGATGTACAGGAGCCAGAAAAGCGAAAACCCCGATAATCTTTCTATGTTTGGCGACGAAGAAGATTACCGGGGCCATCTAAAAACCGCATAGAAGCTGTTGCTCTATGCGGGGAGTATAGTTATATGCCCGGAAAAGTTCAAGACTTCTTTCTGTGCTCACTCCTTCTGTGCAACATAAGTGCAGGATGGTGTG +>IncFII(pKP91)_1_CP000966 +TTTTGGTGTGCCACGCCGTAAGGTGGCAGGGAGCTGGTTTTGTGGATGTTTACCCGGAACCAGAAAGCAAAAACCCCGATAATCTTCTTCAATCTTGGCGGACAGAAAAGATTAACGGGGCCTTCATAAACTGCATAGAACGTGTTGCTCTATGCAGGGAGTATAGAATTATGCCCAGAAAAGTTCAAGACCTTCTGTGCTCACTCCTTCCGTGCAACATAAGCGCAGGA +>IncFII(pAMA1167-NDM-5)_1_CP024805 +CACACCATCCTGCACTTATGTTGCACAGAAGGAGTGAGCACAGAAAGAAGTCTTGAACTTTTCCGGTCATATAACTATACTCCCCGCATAGAGCAACAGCTTCTATGCAGTTTCTTGTTAGCCCCGGTAATCTTCTCTTAGTCGCCAAACCTGGTGAAGATTATCGGGGTTTTTGCTTTTCTGGCTCCTGTAGATCCACATCAGAACCAGTTCCCTGCCACCTTACGGCGTGGCCAGCTGCGTATTTTCATGAAAGGAGAT +>IncX4_2_FN543504 +ATGGTCTTAAAGAATAATAAAAATAGCGACTGTAATGATGTTCAAAGTTTGTTGGCACAGGGAAATCAATTGCTGGAAGGTGCATACGATATAACGCTAATTGAAATGCGTCTTCTGTATCTGGCATTGACTAAGATTGATAGCCGTAAACCGCAGCCTGCAAATGAATATACATTGTTTGCGAAGGAATACAGGGACACTTTTTCTTTAGATTCGAAAAATTGTTATGAACAGTTAAAATCTGCTGCGAGTTCTTTAGGCTCAAAGCCAATTGTTACGTATGAATGGAACGAGGCAAAAAAAAGGATCGATGCAGTCAAACGATTCTGGTTTTCTTCAATAAGATATGGTGTTGGGAATAGTGAAAGTGACATAACTTTGCGTTTTTCAGATTCGGTCAGTCAATATCTTTATGAACTGAAAAGCGAATTTACACAAATGAATCTTGAACATATGGTGAAACTGGATACACCATTTTCATTTCGACTTTATTCGTGGTTATATAAATATAAGAATCTGAACCGAAATAAGAAACATAGTGGAGTGATCTCGACAGATCCTATAACCATTGAATGGATGAAGGAGCGAACCGGCCTTACAGGGAAATATCCAGTATATAAGGATTTTAAGAAACGGGTGCTTGATCCTGCTGTTGATATTATCAATGCAAATACGAATCTGAGTGTTACCTATGAAGGTATCAAGTCCGGCA +>pADAP_1_AF135182 +CGTCTTTACAGCTGGCTGGTCAAGGCACGTAACCTGACCCGGTATCGGAGTCACGGGACCATAGAAGTGACCCTCGAGATCGAATGGATGCGAGAGAAGGCTAACCTACAGGGAAAATACCAGGATTACCGGGATTTCAGGCAAAAACTGCTGCAACCTTCTCTCGATCGGATCAATGCCTCGACCGATATCTCGGTGATATGGGAGCCGGTGAAGATTGGCCGCTCCGTACACGCTATCAAATTTACCTACGTCGATGAGTCCACGCCTGAAGCGGTGAAACCGATGCGCCCACGTCTGCCACGACGCCCTCATGTGACGGCGGGATCAGCTGCTGAAGGGGAGTGGGCCAGAAAATGTATCTCGCTACTGACCCAACATATGGCGCAGCTGGAGGCTTATGATCCTAATGAAAAGGTGAGTGTGCCCGACTTAAGAAAACTGGCTGGATGGTACAAGAAAGTGGGGCACCGTGACCAAGAAAGAGAAACGCTGGAAGCCATCAAACTTCGGGCTCAACGTCGAAAAATAGACCAGTAA +>pXuzhou21_1_CP001927 +TAACACAAGGCAATCAGCTTATTGAAGGTAGTTACGATATTAACCTGGCGGAAATCAGGTTGCTCTGGCTGGCCTTGTCCAAAATCGACAGTAAGAACCCGCAGCCGGAGGGCGCGGAGATTGTGTTAACTGCGCCTGAGTACAGCGCTATGTATGATCTTGAATTAGCAAATAGCGCCCATCAGCTTCAATCTGTATCATTAACTTTAGGCTCAAAACCTATTTATACTTATGAGTGGAACGAGCGTAAAAAAAGAGTGGATGCAGTTGCTAGATATTGGTTTTCAGCTATTACCTATGGGGCTAACAAAGGCGCAGATATAACACTTTCTTTCTCTCCGAAAATCGCCCCTTTTCTATACGATCTGAAAAATGAATTTACGCAAATGAATGTGTTTGCAATGGCAAAACTTGATACTCCATTTGCATTTAGACTTTATTCCTGGCTAAGCCGATATAGAAAACTTGATAAATATAAAAACCCAAAATCGGGCGTTATCAGCACTGAAAAAATTAGCATTGATTGGATGAAGGATCGTTCTGGTCTGACGGGTAAATATGCAGACTTTAAAAATTTCAGGGTTAGAGTTCTCGATCCTGCTGTTGATGCTATCAACCGAACGACTGACCTGACAGTTCGCTATGAAACTGTTACTACAGGAAGGAAGGTTACGCATCTGGTTTTCAACTACATCGTTGAAGGTGATAAAGCTTACATCA +>pSL483_1_CP001137 +TAACACAAGGCAATCAGCTTATTGAAGGTAGTTACGATATTAACCTGGCTGAAATCAGGTTGCTCTGGCTGGCCTTGTCCAAAATCGATAGTAAGAACCCGCAGCCGGAGGGCGCGGAAATTGTGTTAACTGCGCCTGAATACAGCGCTATGTATGATCTAGAACTAGCAAATAGTGCGCATCAACTACAATCTGTATCATTAACATTAGGCTCAAAACCTATTTATACTTATGAATGGAACGAGCGCAAAAAAAGAGTCGATGCAGTTGCTAGATATTGGTTTTCCGCTATTACTTATGGAGCGAATAAAGGCGCGGATATAACGCTTTCTTTCTCTCCAAAGATTGCACCTTTTCTGTACGATCTTAAAAATGAATTTACGCAAATGAATGTTTTCGCAATGGCGAAACTTGATACTCCATTTGCATTTAGGCTTTACTCCTGGCTAAGCCGATATAGAAAACTTGATAAATATAAAAATCCAAAAACGGGCGTTATCAGCACTGAAAAAATTAGCATTGATTGGATGAAAGATCGTTCTGGTCTTACGGGGAAATATGCAGACTTTAAAAATTTCAGGGTTAGAGTTCTCAATCCTGCTGTTGACGCTATCAACCGAACGACTGACCTGACAGTTCGCTATGAAACTGTTACTACAGGTAGAAAGGTTACGCACCTGATTTTCAACTACATCGTGGAAGGTGATAAAGCTTACATCAGGGTTAAGCCAGAGCCACCTAAGCTACCGCGTAGGCCGAGAGTTAAAAAGGGCAGCCACGGTGAGGGAGAATGGGCTAAAGCGTGCATTGAATTGGTACGTGAGTATGAAAGAAAACTTAAAGAATACGATAAAAACGAAGCGTTGCCAGTTGCTTATCTGCGTAAAGAAATTCTTTATTATGGGATCATTGGCAATACTGAGGCGGTTAGTTATATAGAACGGCTTATTTCAGAACGCAAATCAAAACGAGCCGCAAAAAAAGAGGAAAAGTGA +>pYE854_1_AM905950 +TTGATGCTCTTGGCGGCTTAACACCTTCCCAATACTGCCGATGGTTGTGGCGGCGTAACTCGAATGAGAACGGCCGTCATTTGTATGTCCCTGTGGGCCAAACTAAGCGGCAACGCAAAGTCATCTCTTCTCTATCTTCTTTTTACCTTCAAACCAATACAGATGAAGATCTCTACTTCACCCCCAATACGTTTTTTGATTGGCGTAGAAAAGCGCTGTTATCAGGGCTGTGTGCAAACTATGTAGAGATAGATACTTCTATTGAACGGATGCTGACTGCCAGTGAGTCTCAGCAGGTTCTCGATGAGGTATTACAGCAAGTGGCAGCTTCAGGTACGCCAAGTCCTAACGCCATTGTAGAGAGTGGCTCAGGAGGTCTTCATCTATATTGGTTCTATGAAATGATAGATGCTTTTCCCGCACAGAAACTAGCATGGGAAGCTATCTCTAAGAAGCTTACTGATAGGTTTACTGGTGGTGATCTATGGCATGTAGATACAGGTGCATCCCATGACATGACCAGGTTTTTACGGTTACCAGGTTCGAAGCATTCTGCTAGCGGGAAGCGCGTTAAGATTTGGTTGTCAGAACAACAATATTCTTTCAAAAGTTTGGCATCTAAGTTGGATGTTGTTTATTCGCCAACAGTGATGGAATCAATACGGGTAAGTGCATCAGTAGTTCCCAACGAGACACCGTTACCAAGATCTACGGAGCCAGAAAACAGTACACCGGCTAGACACAGTATTGCTAATTGGTGGAGCCGTATCTATTGGCACCTATCCAGCTTTATCAGAAGTTCTAAGCGAATTAAGTCAGGTCAGCGTGATAGCGTTGCGTTTATCGCCTTTGTTGCACTACGCCGCATTACGTCAATTAATAAGGCTTGGGAGTTAATTCGAGAGCTTAACGATAAGCATATAGGACTGACTCCAAGTGAGCTAGAACAGTATTTATCGAGTGCTGTAAAAACCATATA +>pIP32953_1_BX936400 +AACATATCTCGCGATGAGATTCGTTTTCTATTCCTGGCATTAACTAAAATAGATAGTAAAATTCCTCAGCCTGATGGCTTATATACTCTGTATCCTGCTGAATTTGAGAAAATGTTTGGTGTGAATAAAGCGCATATTCATCAAAGCTTAAAAAACGCGGCATCGTCGCTAGGTAAAAAACCTATCTACACGTATGAATATAATGAGAAGAAAAAGCGAATCGATAGAGTAGAACGCTTCTGGTTTTCATCTATCAGATATGATGAGTCCGGCGTCGGTGCTGATGTCACTGTTCGCTTCTCTCAAGATGTAGCCCTTTATTTATATGAGTTAAAGAAAGAGTTCACCCAGCTAAAAATTGATGTAATAGCGAAACTTACAGACTCACCATTTGCTTTGCGTTTATATAGTTGGCTAATTAAATATAAAAACCTTTCAAGATGTATAAATAGTGAAAAAGTTATTACAACTGATGCAATTGATATTGAGTGGATGAAAGAAAGGGCAGGATTAGCAGGTAAATATAAAGAGTATAAGTTTTTCAAGAGAGATATATTGGAACCAGCGATCAATGTAATTAATGCAAAAACCGACATCTCAGTATTGTGGGAGCCCATTAAGCATGGCCGAAATATTGTATCTATAAAATTCTCATATGTTGAAGAAAAAAACTCACTGGGATGTAAACCACTTAGACCGCGCTTACCTAGAAGACCCAAGGCTATCAAAGGTTCAGCAATGGAAGGTGAGTGGGCTTCTAAGTGTATTTCTATTATGAGTGAGTTTAAAAAATCACTTATAGCCTATGATCCTAATGAAAAAATTGCCGTATCAGATTTAAAAAAATGGGTGCATTGGTGTGAAATTATTGGTGATAAATATCAAATGAAAGTAATAAATGCTGAGATAAAAGAACGGACAAAGTAA +>pIP31758(p153)_1_CP000719 +GTTTACATCGCTATGTTGAAAATCGATAGCAAAGTTAAATTAGAGAATGGGTTAATGCCTGAAATCAATGTCACCACATTAGAATTCAGGGAAGCATTCAATATCAAGTCGCACACCATGTACAATCGATTGAATCAGCTAGGTGACGCCCTACTGGTCAAACCCATTATTACTTTTGAGTACGACGAAGAAAAGCAGGAAACAGTAAAGAGAAAGCGGGTGTGGTTTACGAGTGTTAGCTATGTTGATGATCAAGAATCCAAAGCCATTAATTTACGTTTCTCACCTGAACTGCTGCCATTCCTCTACGCGCTAAAAGATAACTTCACCAAAGTTGACTTCACTTATCTGGCTGAACTGGATAGCCCCTTTGCTATGCGTCTCTACCAGTGGCTGCAAAAATATAGAAGAATGAAGAAGTACAACAAAGGTGATGGGCTGGTCGAAACCGAACCCTTTAGTTTAGAAGAAATTAAAAACAGAACAGGGCTGAGTTCTAAGTACCCAGAGTACAAAATTTTTAAACGCGACGTACTTGATCCTGCGATCCATAAAATAAACCGAGTCACCGATATCTCTGTGACTTACAAGCCCGTAAAAAAAGGGAAGACAATCATCGCGATTATCTTTGCCTATGTAGAAGAACAGGGCGGCGTGTCATCTAAACCTTGCCGTGCAAGACTGCCGACCCGACCAAAAGTGACAGTAGGATCTAATGCTGAAGGTGAATGGGCCAAACGCTGCATTCACATTATGGAGAGTTTCAGAAAAGCACTGCTTGAGTATGATCCCAATGAAAAGCTGCCAATGCCTGACCTCAAGAAATTACTGAGCTACTACGAAATCGTGGGTGACTCGCATAAAGCCAGCAAAGTGAAAGCAGAGATCGCTAGCCGGACTGGGAAATAA +>pIP31758(p59)_1_CP000718 +GTGCATAGACAGAATTCACCAAGCATCTTTAACGATGCACAATTTATTCATACACAAGAGAAAACTCGGCGCGGAGAAGCTAATGCTCTTCGTAAAGGGGTATCTAAGATTCATCGACGCTATATACCCGCATTTAATGACTCAGTGCCTCGGGGAGCTGCTGGTCAAGTAGTCGCACGTATGCGTAATCATGATTGGAAGCGCAATCAGGCATTATGCGAACTCCGAAAATCGGGCTATACCCCATTTAAGAAACGAACTGACCCTAATTTCGTTCCTAAGCCTATGCGCATAACGCCAAGAAGCGAATGCAGAGAAGCATTAACAGCTCTATCACTTGCATTGGCTGCAAACTGTAACTATGACCCTACGGCTGAGTACCCTTTTGAAGTGATGTGCTCTATTGAGGATTTGGCTCGGAGCATGGGGGTGTTACATGTTTATGAGGATGGCCGTAAGGCTTACGATATTTTACTCAATGCTTTATCGGTCATTGAACAATTGAATTATTGTGTTGTTCACCGTGAAATTGATCCTGATGTTGGCCAATACAAGCCGATCAGAATGTGGTTAACCCCACAGTTCTTCTTGTCTCGGGGTTTCCAGATGGATGAGGTTCGGGAGTTATTAAATAAATACCGGCAATGGGCCATAAAAAATGGCTTGAGTGAAAGCCTCAAGAAGAAGTATCAAAGACATTTATTGCGTATGGCTAGATTGGGTATCGATATTGAAAGACGGCACTCACTAAAAAATCTATTACGTAAAATTAAACGTCAGGTTGTTAGTGCTGATTTACAAGATGAGAAAAAAGCGGCTGTTGTCGATATTGGCCAATACCTTGATAAACTGGCTAAAGCGCCTAAAAAAATAAAGAAAGCATCTTTAACACCGTATGAAACTGCATACCAGAGGTGG +>pESA2_1_CP000784 +ATGCTTATTCATGACGTAACGGAAAGAAAAAAAGCGTCAGCAAGTAAAATGCTTAGTCTTCTGAGTTTTCTTAAGGAGGAAACATATTCCGACTTTAATACACTGCGTAATGTCCTCGGTTTCAGTAAGAACGCACACAGCCCTTTATATAAGATACTCAACCGAGCTGTAAAAGAGGGTTTCATTATCAAGCATGAAATCCCTGGTATAAAACAAAAAATAACCATATGGGGAATAACAATGCAGGGGCTCGCAATGGTAGTCACTGCTGATGATCACGTTTTTCCGGGTTATTTCGAACCCGGAAAACTCAGGTACTGGACGCTTGAGCACCGGCTCCTTAACCAGCGTGTGCGAATCGCCCTTGAGGAAAAGGGCGGGAAGAACTGGATTAATGGTGATCGGAGCGAATTTAAGGCGCGTTATCCGGGCGTTCGTCATCGCCCCGATGGAATTATTACATTAAACAGCGGGGCTGTTGTCGCAGTAGAAACCGAACGCTCTCTTAAAACCCGCGCCCGCTACATCAACATCATTAACAGTCATCTGGCCGCCAGTGATGCCGGACGCTGGCACTATGCCATGTACGTTGCACCGGATGAGAGGATTAAAACCGCCCTCATGAGGCTTTTTGACAGCATTAAAACGGTCGTCAGAAACAGTGTTCCCGTGCCTTTTGAAGGTAAGAACCGGGAAATGTTTCTTTTCCGCACCATTGAAGAACTGGAAAAATCAGCGCCAGCTGATTAG +>pENTAS02_1_CP003028 +TTGAGTCACCGCAGTGGTGGTTAAACCGCCTGCGCCGTATCCATGCCCGGTGGCGTGAGCATTTGATGATCGCAGCGGGATACGTCCAGAAAAAATCCTCCCCATACAGTAGCGCCCCGTGCCTTACGGAATGGCTGGCCCAGAAAAAGGCTAACCGTGAATACCTCAAGGCTATGGAACTGGAAGACCAGGAGACGGGTGAGCGCATTTCGCTGATCGATAAAGTCGCTGGTAGTGTTGCCAATCCGGCCAACCGCCGCCGCGAGCTCATGACGAGAATGCGCGGATTTGAAGAATTGGCGAAGCTGGAAGGGTTGGCCGGTGACTTCTACACGCTGACAGCGCCTTCCCGTTACCACTCCATGCAGCATAACGGGTGCCGCAATAATAAATACTGTGGCGCGTCGCCGCGCGAGACGCAGCAATATCTTTGCAAAGTTTGGGCGAGAACTCGCGCCGCGTGGAAGCGTGCCGGAATACGCGTCTTTGGTTTTCGTGTCGTTGAGCCGCACCATGATGCAACGCCGCACTGGCACTTACTGCTGTTTATGCATCCATGCGATATCGATCAGGCCCGCGATATTTTTTGCTATCACGCCAGACGTGAAGATTCAGCAGAATTAAAAGGCTCGGAGGCCATGAACCGGGCGCGTTTTCACGTTGAACCGATTGATCCGGCGAAAGGGTCTGCAACGGGATACATCGCGAAATACATTTCGAAGAATATCGACGGCTTCGCGCTGGATGGAGAAAAGGACGACGAAACCGGGGAAGAGCTGAAAGAAATGTCCAGGCGCGTTAGTGCGTGGGCGTCGCGCTGGTCTATTCGCCAGTTTCAGCAGATCGGTGGCGCGCCGGTAACGGTATATCGCGAACTTCGCCGCCTCGGCAATCGTGAACTTGTTTTACACCCTGAACTGGAAACCGCACGGCAGGCTGCTGATGCAGGTGAATGGGATAACTATGTATTAGTCCAGGG +>pEC4115 +ATGTTGCCAGTAGAGGTGAATACGCGAGAGGGGGAGTTAATATTTCAATCAAATGCTATTACTGATGGTGTTTATAAAATAACACTTGATGAATTTCGTTTGTTAAATTTAGCTATATCTAAGATCTCAAGGCACGATAAACCTGAGAAACGTATAAGGATTACAACAAAAGAGTTTGTTGAAGTCTTTAACATCAAGGATAAAAACGTTAAAAATAGGTTATCAGCAATTGCTGATGGGTTGCTAGGAAAAACTATTGACACATATTCTTTTGACCAGGACTCTGGGAAGAAAACAAAAAGAAGGCGCCTGTGGTTGTCAGAGGTAGAGTATGATATTGAAGGTGAAGAAAATGTATTTTTAGAAATCGTTTTTTCTACCGAAATATCGGATCTTTTATTTCAATTAAAAGATAATTTTACGTTATTTGCATTAAGAGCAATATCAGCATTTACCTCTCCTCATTCTTTTAGAATATATGCTTGGTTATGTAAATATAGAAACATGTATAATTATCGCAAGGGAGAGTTGATTACAACTGATACAATCAGTGTTTATGATTTTAAAGTGATGTTGGGATTGGAAAAATCCTATGAAGAGTATAAGTTTCTAAAACAAAAAGTAATTGAAAGATCAATTAATGAAATAAATTCATCAACTGATATTTCAGTTGTTTTGAATGAATATAAGGCATCCAGAAAAGTTA +>pJARS36 +ATGAGGATTCCGAAGAGAAGGAAACTTGGTTGCCAGCCAGTAAGAAAAATCATGTTCCTGCGCCAAACGTCATTCTCCGCAGCGCTTTATTTGGTATGGTTAAGAAAGGTACGCGATCTTTTGAGAAAAACATCTTAAAAACTTCATTTAACGGTTACATAGTTAAATATTCTGGAGAGCAACTAGATCAATCAGATTTGGACGTGTGGTTGGAATGTGTGCAACGTTGCCAAGAAACTCCTTTGGGACATTCAGTTAGGTTTACCCCAAATGAGTTTTTGCACTCAATAGGAAGGAGTAACGGTAGATCAGATTATGCCTGGCTTCAGGGCAGCTTATGGCGATTACGTGTAAATGATGTGGTTATTTCTGACGGGGATTATTCTTACGCTGGTTCACTGATATATGAACAGTATCTTGATGAAAAAACCGGAGACTGTTGCTTAATTCTAAACCCGAAAATATCGGCCTGTTTTAGTGATGCTGGATGGACGGGTATGAGTAAATTTATTCGGCTACAACTCAAAGGTAAAC +>pSM22 +ACCACCCAGCGCCGGATCTTTTTCAGTCGGTTCTTCAGCGAGTGCTTGCGCTCGATGTCGATCCCCAGATGCGCAATGCGCACCAGGTGGCGCTCGTATTTCTTGCGCAGGCTTTCCGTCAGCCCGTTCTTGATGGCCCACAGACGGTACTGGTTCAGCCACTGGCGAATTTCGTCCACCTGGATGCCGCGGCTGGTGAAGAAGTTCTCTGTCAACCAGATACGCAGCGGCTTGTTCTGGCCGGTGTCGGTATCCTGCCCGCGCGACACGATGAGATAGTCCAGCTGCTCGAGCACCGACAGCGCATGCAACGCCACGTCATACGCCTTGCGGCCGCTTTCGTAGACGTGCAGCACCCCCATCGCTTTGGCCACGTCCTCGAACGGCAGCATGATCTCGAACGGGTAGTCGCTGTCCGGGTTGTAGTCGCAGTTGGCGCCCAGCACCATCGAGAGCACCGTCAGCGCTTCACGGCTCTCCGAACGCGCAGCAATGCGCATCGGTTTGGGACGGTAGTCCGGGTTGTTGCGTTGGGTATAAGGGATATAACCCTGCCGGCGCAGACCGATCAGGTCATCATTACGCCGCCAGTCGTGGCTGCTCATGCGCGCCACCACCTTGCT +>IncQ2_1_FJ696404 +GTCATCTTGGCGACGAAGCCGCACCAGCGGGCGTTGTCGATCAGTGCCGATGCGCCCCGCGCTGCCTGCTGCTGGTCGGTTTGCCCCTCGCGGGCGCTGCCCTTGCTGACGTGGTGCAGGTACAGGACAGACGCGCCAGTGCTGGCCGCGACGTGTTCCAGCGTGGCGACAAGCCGCGCCATGTCGCCGTTGCTGTTCTCGTCGAGGCTGTGAATCCGGCTCAGGGTGTCCAGCACGATCAGCCGCGCCCCGGCGCTGTACTCGATGACGCGGCGCAAGTGCGCCTCGTCCATGACGTTCAGGCGCTTGCCCATGATCGACTCAAGGGTCAGGTTGTCGGCGATGGCTTCGCGGGCCGACTGGTTGAGGTGCTGGCCGATGGCGTGAACGCGCCGGATCAGGGCGGGTTCGGGATCTTCCCCGGCCAGATAGACCACGCGCCCGGTGTGC +>IncQ1_1_M28829 +GTCATGCTCGACAGGTAGGACTGCCAGCGGATGTTATCGACCAGTACCGAGCTGCCCCGGCTGGCCTGCTGCTGGTCGCCTGCGCCCATCATGGCCGCGCCCTTGCTGGCATGGTGCAGGAACACGATAGAGCACCCGGTATCGGCGGCGATGGCCTCCATGCGACCGATGACCTGGGCCATGGGGCCGCTGGCGTTTTCTTCCTCGATGTGGAACCGGCGCAGCGTGTCCAGCACCATCAGGCGGCGGCCCTCGGCGGCGCGCTTGAGGCCGTCGAACCACTCCGGGGCCATGATGTTGGGCAGGCTGCCGATCAGCGGCTGGATCAGCAGGCCGTCAGCCACGGCTTGCCGTTCCTCGGCGCTGAGGTGCGCCCCAAGGGCGTGCAGGCGGTGATGAATGGCGGTGGGCGGGTCTTCGGCGGGCAGGTAGATCACCGGGCCGGTGGGCAGTTCGCCCACCTCCAGCAGATCCGGCCCGCCTGCAATCTGTGCGGCCAGTTGCAGGGCCAGCATGGATTTACCGGCACCACCGGGCGACACCAGCGCCCCGACCGTACCGGCCACCATGTTGGGCAAAACGTAGTCCAGCGGTGGCGGCGCTGCTGCGAACGCCTCCAGAATATTGATAGGCTTATGGGTAGCCATTGATTGCCTCCTTTGCAGGCAGTTGGTGGTTAGGCGCTGGCGGGGTCACTACCCCCGCCCTGCGCCGCTCTGAGTTCTTCCAGGCACTCGCGCAGCGCCTCGTATTCGTCGTCGGTCAGCCAGAACTTGCGCTGACGCATCCCTTTGGC +>IncX1_3_CP001123 +ATGGCTAAAATCTATCAATTCCCTCATGGGAAGAACGCGGGAAATTCAGGAAAGAAATCGCCAAGGAGCGTAAGAAACGTTTTGCAGTGAAAACAGGGAGCACTTTTGTTAATTGGCTTGGCTGGGGATGGTTTTATCTTCGTTTTCTGGCCGCCAGTGTTTTGCATTTTGTCTCTGTTTTTATGTTAGCCATTCTGGGCGCGTTTAAATGGGCTGTGTCCTGGTTGGGTGGTATTTTGTGTGTCATCACCTGGTATGATCTCGATCACCAGTTATGGACGCCACAAAATCTGACTATACCGGTGATTACTGCAACCTAGATTTTTGGGCTGCTGGCTGAACCACTGATGGAGCAGCTCAACAAAACTATGCC +>IncX1_2_CP003417 +GCTAAAATCTTCAATTCCCTCAGGGGAAAACGTGCTAATTCAGGAAGAATTGCCAGGGAGCGTAAAAACGTTTTGCAGTGAAACAGGGAGCACTTTTGTTAAGTGGCTTGGTGGGGTGGTTTTTCTTCGTCTCTTGTCGCAGTGTTTTACATTTATCTTTGTTTTGTGTTAGCCATTCTTGGTCGTTTAAGGGTGATTCTGGTGGTGGTATTTTGTGTGTCATCACTTGGTATCATCTCGATCACCAGTTATGGACGCCACAAAACTGACTATACCGGTGATTACGGCAACCTGGATTTTGGGACTGCTGGCTGAGCCTCTGATGGAGCTGCTCAACAAAACTATGCC +>IncX1_4_JN935898 +ATGGCTAAAATCTATCAATTCCCCCAGGGGGACGAACGCGGTAAATTCAGGGAAGAAATCGCCAGAGAACGTAAGAAACGTTTTGCGGTGAAAACAGGGAGCACTTTTGTTAAGTGGCTTGGATGGACCTGGTTTTATCTTCGTCTTCTGGCCGCCAGTGTTTTACATTTTATTTCTGTTTTTGTGTTAGCCATTCTTGGCGCGTTTAAATGGGCTGTGTTCTGGCTGGGTGGCATTCTGTGTGTCATAACCTGGTATCATCTCGATCACCAGTTATGGACGCCACAAAATCTGACTATACCGGTGATTACGGCAGCCTGGATTTTTGGTCTGTTGGCTGAACCGCTGATGGAGCTGCTCAACAAAACCATGCCCTG +>ColRNAI_1_DQ298019 +CTCGGCTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTAAGCAAGAACCCCCCGTTCAGCCCGACTGCTGCGCCTTATCCGGTAACTGTTCACTTGAGTCCAACCCGGAAAAGCACGCAAAACGCCACT +>Col3M_1_JX514065 +GATGTTAAAAACGCACTCAGAAGCTCGCAAAACCGTTCTAAACTTTCAGCGTAGATTTGGGTGTTTTATAGGGTGATCGTGTCTTAAAATCGTTTTGAGGGGCTTTAATGGGGATGAACGGGCGGTTTTTGCTAACTAACTCGCCCGTTTAACATAA +>Col156 +TACGGGATGGGGCGAAACTGCCACCTGTTCGAAATGACGCGCAAATGGGCTTACAGGGCGATTCGTCAGGGCTGGCCTGAATTCTCACAGTGGCTTGATGCCGTGATTCAGCGTGTCGAAATGTACAACGCATCGCTTCCTGTTCCGCTTTCAC +>Col8282_1_DQ995352 +CTGAATTGCAAAAGACCATGACTGTTACCGCCGAAGAGTATTTCGACTCATTCCCTGATATGGGGCGGAAAAATGCCGAGGTTCAGCTACAGGAAGCAATTGATCGTTTGTGGGACAGGTCGATCATCCTTAAGGACGATGAGAAGCGCGAGGAGTTCCGCTGGATCCAGTATCGGGCACAGTACGCTAAAGGTGAGGGCAAAGCCC +>Col(MG828) +ACCTCTCGCATGTTGTCGGTGATCCCGTTGTTGTTCTTTCAGGGATGAGTCGTCAGATAGCCCTTCAAACGCGCTCAGAAGCTCTCAGACGCACTAAACGGGTCTTAAATGCCCGTCAGGGCATGGGAGGCGCGAAAAACGCTTACAGAGCGTTTCAGGAGGTCAGGCGCGCCGATACCCCTAACCAGGGGCTTTCAGGTCGCCAGGAACAGCGTCAGCCCCCTGCAAAGCCTATTTGCACGGCACAGGCAGCTATTCGGTT +>ColpVC_1_JX133088 +CCGTCATCGTCGCCCTCGGAAATATCATCCCCGATCACCATGTCGGCGTCGGTTTCCTGATCGAGTTTCAGCACGTCTTTGAGTGCGCCGCCGGTCGCCACAAAGCGGCGCTTGTGCGTCTGGCGGGTCAGTTCGAGGAACCATTCAGGATCGGCCACCATGTCAGCCGGCTTCGTGGAATATTTCAGGGTTT +>ColKP3_1_JN205800 +CGCAAACGAAGTCCGGCACACGGCCAAGTCCATTGCCAAATGGACGCACCAGCACCTAAGCCCCGCAGGGTTCAGAGAGGAGCAGGCCCGGAGAGGTGCGAAGGGCGGCAAGGTATCCAAGGGAGGGGGAAGGCCGAGCAATAGCGGTAAGGACAAGTCCGATCTATTGCCGGAGGTTCTGCGGCTTAAGGCTCAGGGGTACACCAACCGCGATATAGCGGACGATCTTCAAATCTCCCCCAGTACGGTGAGCGTTTACCTAAAGCGTGATCGTCCGTGA +>Col(IMGS31) +GAAAATGCTTCAATTTCTCAGAGATATGAAAAATATAAAATTAACAGTGATGTTTTAGATCTAATACAAGAGCATAAACCGGCAGAATTTAAACAACTCTTCAATGCTGCTATTGCAGCAGCAGATGCCGAATATTCACAGAAACAGCAAAATAATAACTACACACCCCAGAATAAGCCAAAGGCTTTAAAATTATAA +>Col(BS512) +ATGAATGCGGCGTTTAAGCGAATGGAAAAGCGAAAGGAGCTATCACCTGTTCAGGGGTGGATCAGGGCTACGGAGGTGACGCGAGGTAAGGATGGCAGCGCACATCCGCATTTTCACTGTCTGCTGATGGTGCAACCTTCTTGGTTTAAAGGGAAGAACTACGTTAAGCACGAACGTTGGGTAGAACTCTGGCGCGATTGCTTGCGGGTGAACTATGAGCCGAATATCGATAT +>ColE10_1_X01654 +GGACTAAGAAAAACACTACACGATGCTTTAACTGCAAAAATTCAGCTCACCAGTTTTGAGGCAAAATTTTTGAGTGACATGCAAAGTAAGTATGATCTCAATGGTTCGTTCTCATGGCTCACGCAAAAACAACGAACCACACTAGAGAACATACTGGCTAAATACGGAAGGATCTGA +>Col(IRGK)_1_AY543071 +CGGTTTTACAGCAAAATCCTCCATAGCGAAGCAGAAGCCCGGAACGGGTAACTGGATGGTTTTCCCCCGTGGGGGATTGATCTGTTACTTGAAAACCAATGATCTTAAAAGCCATCTCAAAAGTTGAAAATTTCACCCCCTTAGTGTTCTTAAAATTCTTAGATGTTCTTAGGAGTTAAAAAAC +>Col(SD853) +TTGATTTATTCATCTGAAAACGATTATAGCATCCTCGAAGACAAAACCGCAACAGGTAAAAAGCGGGATTGGAAGGGGAAAAAGAGACGTACGAACCTCATGGCGGAGCATTACGAAGCGTTAGAGAGTAAGATTGGGGCACCTTACTATGGCAAAAAGGCTGAAAAGCTAATTGGTTGTGCAGAGTATCTTTC +>Col(YC) +ATTTTGAACAGGGCTGTCATAAAACCAGCTTTAAAAGAACTAAATGAAAAAAGTGATCTCACTGTCTTTGTTGAATCCATAAAGAATGGAAGAAAAGTTGTTGCCCTTCGCTTTACGTTTAAAGAAGATAAGCAAATAAAATTGAAAGTTTAG +>Col(pWES)_1_DQ268764 +GAGCCAAGGTCGAGGGCCGCGAATTCATGCGGCAGTCGGGGGCAGCATGGGTCAACGTCCAGGCCGGCTATCTGGACGAGGGCAGCGGCCCGGTGCTGCAACCCATCCCCTACGGCGTCATGCCTCGGCTTGGTTTGGCGTGGGTTTCGACCTTCGCGGTGCGCAACAAAGAGCGAGA +>Col(Ye4449)_1_FJ696405 +TTAACGATCACGGTGCTGCTCCAGCAGTTCACCGAGATTGCGGTCGAGGCTGTTTAACACCGCCAGCAGGGACACACGCTCAGTGGGATTCAGTCCGTCGAGCTGGTTAAGACGGCGGGCGATCTGGTTGAGGTTGTTGCCTATCCCGCTGACCTGTCGCAGCAGTTCGGGCGCCACATCGGGCAGACGGCGCT +>Col(YF27601)_1_JF937655 +GGATCCTTGAGCAACGAACTCTAGAATCCGGAAGGTAACTGAGTTCTTCGCGGGAATCAGTCTCCAAATCGTCCTTGTAGTTTAGCCTCTAGAGGCAGACTTCTTCAAGTACAAAAGTAAATACAGTGTATTTACATCCATCTAAAGATTCCCGCTAACGTTCCCAGTTACCAAT +>Col(MP18) +CCGTCATCTGTACCCTCTGCCATGCCATCCGCCATGATTAAATCCTCGTTCGTTTCCCGCTCCAGTTGCAGAACGTTCTTAAGCGCTCCCCCCGTAGCAACAAAACGACGCTTGTGTACCTGCCGTGTTAATTCGAGGAACCATTCAGGATCAGCCAGCATATCAGCAGGCTTTGTGGAATATTTCAGAGTTT +>Col(KPHS6) +ATGCAAACTCAAAATGTTGTGACGGACAAAGAACGGGAAATCAGAAAAAGAGATCTTGAAGATAAAGACCGTAAAAACGCCTCAGAGCGTCGACAGGAGCAAAAAAACCAAAACTTCACCCAAGTATACCCTTTAGGCTGGAAGCGTCTCAGAGAGCTTTTCAGGAAGAATCCGGGGG +>Col(VCM04)_1_HM231165 +CGTGTGGGTACTCCTGTTCGACGTTGACCAGCCCCTAGCGGCGCTGGCGTGGGAAGCAGCCGGACTTCCGCCGCCAACGTGGACGGCACAAAACCCTGAGAACGGGCACGCCCACATTGCCTACGCGCTGAGCGCTCCGGTAGCGAAGTCGGACGCGGCGAAGCTCAAGCCCCTGCG +>Col(MGD2) +TATGGCTTAGGCCGCAACTGCACTCTGTTCGATAAAACACGGAAGTGGGCTTATCGCGCTATCCGTCAGGGCTGGCCTGAATATGACCAGTGGCTGCAAGCTTTGCAATTTTCATCGGCTCTGGATGATAATGAGG +>IncI2_1_KP347127 +CAGGCTTGAACATCGTTGATCGATTGCGCCCATGCTGCTAAATTTGCAGGCAAGTTTTCCGCGATTTGTAAATGCAGAAAACGAGGTGCTGAAATTTTGTTCGAGAACGTAAATTTCAGATAAAGAAAACCCCCGTAATCTCGTCTTTTCCAGGGAGCGCAGATTAGCGGGGGTTGACCTCAAGGCAGAGCCTTGAGCTGATAACATTTTATTTCAGGTAATCGCTTACTACCTGAAGTGGAGTTTAATTCCATGAGAAGGAAATATCAACTCTTACAGTGCAAGCTAAGTGCAGCTTGCTGTGATTAGCAAACGTCACTGGTC +>pKPC-CAV1193_1_CP013325 +ATGTGTTATCACCTTCATATTGCCTCAGGCACGATTCCGGCTTGTTTTACAACCTTAGCGAATGAAGCAGGACTGGCGACGGTTTCAAAAGCCGGTAATCTCTCAATCACTCGTGCTACCCGAGCGGCACACACGCTGGCCGCGTGGGGATTGATCCAGTACAAGCTCATTTGGGATAAAGTAACCAAGCAGTATTTCCCTGCTGAAATAGAAGTCACGGAACTGTTTTTCGATTTTATAGGTGTAGGCGCGGATGCGTTTAAAAGAGCACAAAATCAACAGTTAGCATGGATAAATCGCGGACTGTTAAAGAAGGGGGAAGCCGCGATCAGCCTTACAGAAGCACGTAGACGCCAGAAACAGCAGTATATCGAAACTACGTGGAAGCGCCGTAAAGCCTCTCAGGAAATGAAGAAAATTCAGAAAGCGGCCAAGGTTGCTGTAGCTAAAAAAGATGAAGAGCTGCGGCATATGGTTGCCAAACAGATTCAAAGTGAAATCCGGCAGGGATTGCATGAAGGTATCGATTTAGCTTCGGTGAAACACCTTCTGAATAAGCGCATCATGTATTACCGTACCGTCGCCAGTTCTGACGACCCTAACACCGCCTGA +>pKP1433_1_JX397875 +ATGGATAGTTCTGACGCGCAGCAAAGCCCTTTTGCGATCAAAAAGAAAGATTCGGGAGAAAGTTATGAACTGACTCCCAACAGCAATAAGACGGTACAGCCAGTGGCGCTGTTACGTCTGAGCGTGTTCACTCCTGTATCACCTAAAGAGAAAGGTAAGCGGGACTTTCTGATCGATGCTTCAGAAGAATTGTCCAGTCTGGAGGTTGCCCGGCAGGAAGGGTATACCAACATCAAGATCCAGGGCGCCAAGCTCGGGATGTCTACGGACTTTAAAACCTGGATTGGCATCATTTCTGCTTTCTCAAAGTATGGCTACACATCGGAAAAGATTACGTTGCCGTTCTCTGAGTTCGCCCGTATGTGCGGCCTGCGACCCACAGACATCAATGGCCGCGCCCGTAACCGCCTGAGTGAAGCGCTGTTCAATCTTTCTAGTGTGACGTTGTCCTTTCGTAGCCAGGACGGCAAGCGCAGCCTGGTGACCCACTTGGTGCAGCGTGCTCAGCTGGACATGGATACCAATATGGTAGAAATCGTGGGAGACCCCAGCCTCTGGGAATTATATCGCTACGATCATAAGGTTTTGCTGGGTCTCAAAGTCCTTTCAGCCCTTTCACGTAAAGAATCGGCCCCCAGTCCCTCTACGTCTATTTCGAAAGCATGCCAGCCGGGACATTGTACGTTTCAATGA +>pKPC-CAV1320_1_CP011573 +ATGATAATACAAGATAACCATACTATAGAAATATTTAAAAATCAATTACCTGTAAAGCCTTACTGCTCCAACAACTTGCAATCAGGCTTGAGTATCAGGAACAAAAATAGAGCACTTGAGATGCTTTACCTTCAAGCAAATCAGCCAGCTATACAAACCTGTTTGCTGTTCGATCTCGATGAGGACAACGCTTTCTATAAGTTCGATGAAGTAGGGCTTCCGGTTCCTACGTTCATCACTAAAAGCCCTGATTCTGGTAGGTGTCATTATGGCTATATGCTTAAAGCCGGTGTCTGTAAGACTCAACACGCAAAGCTGAAGCCATTGAAGTATGCAGCTGCTGTTGAGGCTGGTATTGCTGGGAAGTTAGCTTCTGATCGTGGGTATGCCGGGCTGATTACCAAAAACCCACTGCATAGCCATTGGTCGCCGTTCTGGTCGGGTGCTGATTTATATGAGCTGGATTATTTAGCTGATTTTGTTGAGCTGGAGACACCAAAGAAGGCAAAAAAATCAGAGAACTACGGGCTAGGGCGTAATGTTAACCTGTTTGAAGATTTAAGGACTTATGCTTATAGGCGAGTTCTGAAATTTAAAAAGGACTCAACTTATGAAGCATGGGAACGTGATGTTTTAAGTATAGCTGAAGGACTCAATAATCATTGTAATGCTTTAAATCCGCTACAATATAATGAGATAAAAGCAACTGCGAGATCTGTTAGTCGTTGGACTTGGAAGCATTTTGATAGTGCTATTTTTTCAGATATACAATCAAACAGAGGTAAAAAGAACTTAGGTAAAACAAAAAATACCAACGTAAAATCTGAGATGTTAGAAATATTAATGAGCAAGGGGGCATTATGA +>FII(pBK30683)_1_KF954760 +TGGCAGGGAACTGGTTCTGATGAGGTATCTACCCGGGACCAGAAAAGAGAAAACCCACTAATCTTCTGAAACTTGGCGGATTCGTAGATTAAGTGGGTTGTCATTAAAACTGCATAGAAGCTGTTGCTCTATGCAGGGAGTATAGTTTTATGCTCAGAAAACTGCAATACCCGTTTCTGTGTCATTTGCTCCTTCCGTGCAACATAAGCGCGGGAAGGTGTGACTGA +>FIA(pBK30683)_1_KF954760 +ATGAAGTGTGACAATCTGAAAACCTGTCACACTTCACATGGATCTGTCATGGCGGAAATAGCGGTTATAAACCACAAAAAACGTAAAAATAGCCCGCGGATTGTCCAGTCAAATGAGCTGACTGAGGCGGCATATAGTCTCTCCCGGGATCAAAAACGTATGCTGTATCTGTTCGTTGACCAGATCAGGAAATCCGATGGTTCGCTGCAGGAACATGACGGCATCTGCGAAATTCATGTTGCTAAATACGCTGAAACATTCGGGCTGACCTCCGCTGAAGCCAGTAAGGATATAC +>Col440I_1_CP023920 +ATGCACGAACCCCCCGTTCAGTCCGACTGCTGCGTCTTATCCGGTAACTATCATCTTGAGTCCAACCCGGTAAGACATGCAAAAGCACCACTGGCAGCAGCCACCGGTAACTGA +>Col440II_1_CP023921 +GTCGATTGCCATCAGTGCGGCCACAATCTGCACCCGGTCATGACCGGCACCACCGGCATTCACTTTCCGGGCGATCTGGTTCAGGTTGTTCCCCATACCGGCAAGCTGGCGCAGCAGCGCCGGCGATATCGACGGCAGTCTGCCGGCACGCGCCGGCTTCTCATCGAGGCAGGTCTGACGCATCCACGCCGCCAGCTGCTTGCCGTCGCACCGCTCGAGCAGCCGCCGGTGTTCGTCTTCCGTCACCCACATCGTGAGCATCTTGTTGCGTTTGTCTGCCAG +>IncI_Gamma_1_AP011954 +CGAAAGCCGGACGGCAGAATGCGCCATAAGGCATTCAGGAGAGATGGCATTTACGGGCAGTAAGTCAGAAGACCGAAGATGTTCCGGAAGCCATAAAAGGAAAACCCCCACAATCTTTCGACGAACTTGGCGGGACGACGA +>Col(pHAD28)_1_KU674895 +CTCAGTTCCGCGAAGGCAGTTCGCTCCTGGATGGACTGTATGCACGAACCCCCCGTTCAGTCCGACTGCTGCGCCTTATCCGGTAACTATCATCTTGAGTCCAACCCGGAAAGACACGACTTATCGCCACT +>IncFIB(pN55391)_1_CP016411 +GCTTAGGATTGCGATAATGAACGCTGAAGTAGGTTGCTCGTCCGCGCTTAAATTCTGTGTAGTCCAGATAACCGATATCCCTGAGTTGCTCCATCGCCTTACGGACCGTGTGGTTCTGCGTATAGACATTGGATGTGAGGTTCAGTCTGTCCCGCATACGCTTCATTGAGATAGGTGCCGGATTCTGCGGAAGACTCTCTATGTAGGTATACAGCGCTTGTGCAGATTCTTTTCTCTGGAGTGCATCAATAGCCTTCAGACGAAGAAGAACTCTTCTGTCCATATGATACAGCTCGAACAGCTTAGGCTCCGCCTTAATCTCAACAATATCTTCGTTAATGTCATAGAATGCCGACTGAACAAGATGGGTTGTCCAGCCTTTGGTTTCACTCTGGAACTGCAACGTCACCGAAGCCAGTTTGAATAAGGAATTACTGATGCGATCGCGCATTTTCTTGTTGGAACGCCGGGAATCAAAACCACACATTTTAACAAACTCAACAAAGGACAGTTCCAGAGTGTCCTTTTTTACACCATACTCTGACATGGAACGAATGATC +>IncFIB(H89-PhagePlasmid)_1_HG530657 +ATGTCCACAAAAAATAAAAAAGGTAAAAATAACAAAGAAGTAGAAGATAACATCGACAACTTTGAAGAAGGTTCCCTTGAATTGTACACAGGGGAACTTGTCCCTAATAGCAACAATACAGTCCAACCAATTGCGTTGATGCGACTGGGGTTGTTCGTCCCCACGCTTAAGGGAACAAAATACAGTAAACGTAACAAGCCAAATGAGATCGATGCTTCAAAGGAGCTTGTCCAGCTCGAAGTAGCCCGTTCTGAAGGCTATTCCGATATCAAGATAACCGGTCCTCGTCTCGACATGGATCATGATTTCAAAACGTGGGTGGGCGTTGTGCGTTCGCTGGCAGAATACGGCGAACCTAACGGTCGTGTCGAGTTAAGCATCACGAAATTTGCGAAGTTTTGTGGCTATCCATCGTCACAGATCCGCAAAACACTCCGCGACCGGCTTACAAACAGTCTTTTGAAGATCATGCGTACAACTCTGTCTTTCCAGAGAACGTATGAAGAAAAGAACGTCGACGGCTCTAACAAGATCTCGCTTCTGATGGTGCACCTCATCAATAGCGTGGACTACAACGAGCAGAAAGATACGGTGGTGTTCTATGCAGAACCGAAGCTGGCCGAACTATATCGCTTTGACCATAAGGTTCTTTTGCAGTTAAAGGTTATCAATAAGCTACCACGCAAAGAAACAGCACAGGCTCTGTACACCTTCATCGAAAGTCTTCCAACCAAGCCTGCGCCGGTATCGCTTGCTCGATTGCGTGCGCGACTCAATTTGAGTAGCAGGAATGTCAGCTCGCAGAATCAGACTATACGTAACGGCTTAAAAGCTCTCCAAGATTTGGGCTATCTCGAATACAGCGAGATTAAGCGTGGGCGGTCGATCTATATCCAGATTCACAGCCGCAATCCAAAACTCAAAGTCGCACCGCCAAAACCTGAAGACATCGAACCCAAAAAACCAGATGAGAAAGCTGGGGAAATTGATGCCAAACAGA +>repA_pENTd4a_1_CP008900 +ATGACTGTTCGACCAGGGAAGTTAGTTCTTAAAAAGCGGCCACTCTATCAAGCTAACGTACTGACTCAAGCAAGAGATGGTCTGTCACGCGATCAGCGCAGGCTTTTCTATCTGATGCTTGATTCTATTTCGACGCAGGGTTGGCCTGAAAATGGCGTTTTCAAAATAGATCATCTTTTCTATTCGCAGGTCTTTAAACTCAGTGAGAAAGAAGCACGCGAAGATATTCGTCGGGCAATGGCTGATTTCAAAGGTAAGGAAGTGACCTTGTATGAGTCATGGGAAGGTGGGGTATCAGTCATGCGTGAAATGAGCTGGACTACTTCCAGATGGACTTCTGAGGAACGGGGAATTTATCAAATCAAAATTAACCCTGACTTGCGAGAGTTCATGGAACCATTTGCTCATGACCTGCCCTTTACTATGTACCGTTTAGAACAGGTATCGCGCGTTCCTTCAAAATACTCGATGAAGCTACTGGAGGCGCTATCCCAATTTAAAACCACAGGGTTTTTTGCGATACGTTTAGAGGATCTAAGGGTACGCTGGGAGTTACCGGCTTCATATGAGAAATGGTCGTTACTGAAAGCGCGAGTGCTTGACCCAGCGCTCGCTGATGTAAGAAAGATAGAAGAATTTAGAAGCGTAACGATGATGGAAAAAAGAGAGGGAACTGGCAAGAATGGAAAGGTAACAGGGGTATCGTTCTCGTTTACTATCGACAAATAA +>repA_p447_1_KY978631 +ATGACTGTTCGACAAGGGAAGTTAGTTCTTAAAAAGCGACCACTTTATCAAGCTAACGTACTAACTCAAGCGAGAGATGGTCTAACACGCGACCAACGCAGACTTTTCTACCTCATGCTTGACTCAATTTCTACGCAGGGATGGCCTGAAAATGGAGTGTTTAGAATAGACCACCTTTTCTATTCACAGGTTTATAACCTTAGCGAGAAAGAAGCGCGCGAAGATATTCGCCGGGCTATGGCTGACTTCAAAGGCAAGGAAGTCACTTTGTATGAGTCATGGGAAGGCGGTGTATCAGTCATGCGTGAAATGAGCTGGATTACTTCCCGATGGACTTCGGAGGAACGGGGGATATATCAAATCAAAATTAACCCTGACTTGCGAGAGTTCATGGAGCCATTTGCTCATGATCTACCTTTTACTATGTATCGTTTAGAGCAGGTGTCACGCGTTCCTTCTAAATACTCGATGAAACTACTGGAAGCTCTTTCCCAATTTAAAACTACAGGTTTTTTTGCGATCCGTTTAGAAGATCTTAGGGTGCGCTGGGAACTACCGGCTTCATATGAGAAATGGTCGTTACTGAAAGCGCGAGTGCTTGATCCAGCGCTCGCAGACGTAAGAAAGATAGAAGAATTTAGAAGCGTAACGATGATGGAGAAAAGAGAGGGAGCTGGTAAGAATGGTAAGGTAACAGGTGTATCGTTCTCGTTTACCATCGACAAATAA +>repA_pKOX_1_CP026273 +ATGCGGATGGGGGTTTTTGTCCCGACTAAAAAGAAGGGAACAGAAGCTGAACCAATCAATGCCAGTAGTGCTCTTTCGAAACTTGAATATGCCGCGAAAGAGGGTTATACGGATGTGGTGATTACAGGCCCACGCCTCAACCTGTCAACGGATTTTAAAGTCTGGATGGGTATTATTCACTCATTTAGCCGTAGTGATGATGCCCTCAAAGGAAACACAATTACTTTAAAATTCAGTGACTTTGCGCGTAACTGCCAATATCCAAACAAGCGCTTTGATTCTCGTTTGCGTAAAGAGATCCGGGATTCCCTTGCAAGAATTCGTGGGAAAACTATAACCTTTTCAAGGCCGGGTGCTACTAAAGTCGATATCACGGGCTTATTAAAAACCGCTCAGTTTGATATTGAGACGAATACTATTGTTCTCGAAGCTGACGAAAAGCTGTGGGAACTCTATGCTGATGACAACCTTACACTTTTACGCAAAAAACCGTTATCAGCTTTGCCTCGCAAAGAAGCTGCCCAAGCTATCTATACATTTATCGCTTCCCTTCCGGCTCAACCAATACCGTTATCGTTTAAGCGTCTCCGTGATCGCTTGTTACTTCCCAGTAGCAAAGGGGAGCAAAATCGTACAATTCGCCATGCGCTTGAAGATTTGCGAAAAATCGGTTATCTCGATTATGAATTGGAACAGGATGACACCAAGGAATACATTGTTAAAATCAAACGCAGAAATCCCACTCTAAAGCCAGAAGACTGA +>IncFIB(K)_pCAV1099-114_CP011596 +GTTTGGGATTGCGATAATGAACGCTAAAGTAAGTCGCCCGGCCACGTTTAAACTCGGTGTAATCCAGATAGCCGATATCCCGAAGTTGCTCCATAGCCTTTCGGACCGTGTGGTTCTGCGTATAGACATTTGAGGTAAGATTCAGCCGGTCCCGCATACGTTTCATGGAGATAGGTGCGGGATTCTGGGGAAGGCTCTCGATGTAGGTATACAGCGCCTGGGCAGATTCCTTCCGCTGCAGGGCGTCAATGGCTTTCAGCCGAAGCAGGACCCGCCTGTCCATATGGTAAAGCTCAAAGAGCTTGGGTTCAGCCTTGATCTCCACGATATCCTCGTTGATGTCATAATAGGCTGACTGCACCAGATGGGTGGTCCATCCTTTGGTCTCGCTCTGGAACTTCAGGGTAACCGAGGCGAGTTTAAACAGGGAATTGCTGATGCGATCCCGCATTTTCTTGTTTGAGCGCCGTGAGTCAAATCCACACATCTTAACGAATTCAACGAACGACAGTTCCAGGGTGTCACTTTTTACCCCATACTCAGACATCGAGCGAATGATC diff --git a/biomarker_dbs/orit.nhr b/biomarker_dbs/orit.nhr new file mode 100644 index 0000000..88e9c6d Binary files /dev/null and b/biomarker_dbs/orit.nhr differ diff --git a/biomarker_dbs/orit.nin b/biomarker_dbs/orit.nin new file mode 100644 index 0000000..e6beb86 Binary files /dev/null and b/biomarker_dbs/orit.nin differ diff --git a/biomarker_dbs/orit.nsq b/biomarker_dbs/orit.nsq new file mode 100644 index 0000000..0a79713 Binary files /dev/null and b/biomarker_dbs/orit.nsq differ diff --git a/biomarker_dbs/rRNA.i1f b/biomarker_dbs/rRNA.i1f new file mode 100644 index 0000000..8214ce7 Binary files /dev/null and b/biomarker_dbs/rRNA.i1f differ diff --git a/biomarker_dbs/rRNA.i1i b/biomarker_dbs/rRNA.i1i new file mode 100644 index 0000000..ad638d2 Binary files /dev/null and b/biomarker_dbs/rRNA.i1i differ diff --git a/biomarker_dbs/rRNA.i1m b/biomarker_dbs/rRNA.i1m new file mode 100644 index 0000000..789d865 Binary files /dev/null and b/biomarker_dbs/rRNA.i1m differ diff --git a/biomarker_dbs/rRNA.i1p b/biomarker_dbs/rRNA.i1p new file mode 100644 index 0000000..8d4c287 Binary files /dev/null and b/biomarker_dbs/rRNA.i1p differ diff --git a/constants.py b/constants.py index 59b9e61..e301357 100644 --- a/constants.py +++ b/constants.py @@ -1,46 +1,30 @@ +# default args default_threads = 8 default_coverage = 5 -# batch_size = 1000 + +# int constants frag_len = 5000 k = 7 -err_file = "error.txt" -log_file = "log.txt" - max_frag = 10**6 -# chrom_max = 10**6 -# ex_plas_max = 10**5 # progress bar descriptions frag_bar_desc = "fragments " - -# # sequence filter constants -# plas_filter_val = 0.99 -# chrom_filter_val = 0.01 -# plas_filter_file = "/media/gayal/Programming/FYP/databases/DNAML-plasmid.fasta.probs.out" -# chrom_filter_file = "/media/gayal/Programming/FYP/databases/DNAML_bacterial_batch0.fasta.probs.out" +kmer_bar_desc = "kmers " # Databases -# plas_db_path = "/media/gayal/Programming/FYP/databases/DNA-ML_FYP_2021/plasmid_refs" -# chrom_db_path = '/media/gayal/Programming/FYP/databases/DNA-ML_FYP_2021/bacterial_references' -# plas_db_path = "/media/gayal/Programming/FYP/databases/DNA-ML_FYP_2021/plas-ref-small" -# chrom_db_path = '/media/gayal/Programming/FYP/databases/DNA-ML_FYP_2021/bact-ref-tiny' -db_path = "../../references/biomarkerdbs" +db_path = "./biomarker_dbs" cmscan_path = "cmscan" blastn_path = "blastn" seq2vec_path = "seq2vec" nucmer_path = "nucmer" -# # label files -# plas_label_path = "results/plasmid/Label" -# chrom_label_path = "results/chromosome/Label" -# ex_plas_label_path = "results/extra-plasmid/Label" - -# # target csv files -# plas_target_path = "results/plasmid/target.csv" -# chrom_target_path = "results/chromosome/target.csv" -# ex_plas_target_path = "results/extra-plasmid/target.csv" +# log files +err_file = "error.txt" +log_file = "log.txt" +# results paths frag_write_path = "results/fragments" +kmer_write_path = "results/kmers" # # seq target csv files # seq_plas_target_path = "results/plasmid/seq_target.csv" @@ -52,17 +36,6 @@ # seq_chrom_write_path = "results/chromosome/Data/seq" # seq_extra_plasmid_write_path = "results/extra-plasmid/Data/seq" -# # fragment txt files -# plas_txt_write_path = "results/plasmid/extra/frag-txt" -# chrom_txt_write_path = "results/chromosome/extra/frag-txt" -# extra_plasmid_txt_write_path = "results/extra-plasmid/extra/frag-txt" - -# # kmer files - -# plas_7mer_write_path = "results/plasmid/Data/7mers" -# chrom_7mer_write_path = "results/chromosome/Data/7mers" -# ex_plas_7mer_write_path = "results/extra-plasmid/Data/7mers" - # # circularity files # plas_circ_write_path = "results/plasmid/Data/circular" # chrom_circ_write_path = "results/chromosome/Data/circular" diff --git a/fragment.py b/fragment.py index e53ef84..a41c712 100644 --- a/fragment.py +++ b/fragment.py @@ -3,7 +3,7 @@ from progress_bar import * from constants import * -from helpers import create_fragment_dirs, timestamp, print_error, print_log +from helpers import create_fragment_dirs, print_error, print_log def frag_generator(files, coverage): ''' Iterate through the input files and generate fragments @@ -29,7 +29,7 @@ def frag_generator(files, coverage): yield record.id, fragments except Exception as err: - print_error(f"{timestamp()} Error reading fasta file {filename}: {err}\n") + print_error(f"Error reading fasta file {filename}: {err}") def write_frags(seq_id, seq_frags): ''' Write the generated fragments into files @@ -39,22 +39,26 @@ def write_frags(seq_id, seq_frags): for frag in seq_frags: fout.write(f'>{frag["n"]} {frag["id"]}\n{frag["seq"]}\n') except Exception as err: - print_error(f"{timestamp()} Error writing fragment fasta file: {err}\n") + print_error(f"Error writing fragment fasta file: {err}") def fragment(input_files, coverage): ''' Handler function for metagenomic fragment generation ''' print_log("Generating metagenomic fragments...") create_fragment_dirs() + frag_count = {} frag_gen = frag_generator(input_files, coverage) - prog_bar = create_progress_bar(frag_bar_desc) + progress_bar = create_progress_bar(frag_bar_desc) for input in enumerate(frag_gen): _, seqs = input seq_id, seq_frags = seqs + seq_frag_count = len(seq_frags) write_frags(seq_id, seq_frags) - update_progress_bar(prog_bar, len(seq_frags)) + update_progress_bar(progress_bar, seq_frag_count) + frag_count[seq_id] = seq_frag_count - close_progress_bar(prog_bar) + close_progress_bar(progress_bar) print_log("Generating metagenomic fragments completed.") + return frag_count diff --git a/helpers.py b/helpers.py index 8bad7c9..31c81e6 100644 --- a/helpers.py +++ b/helpers.py @@ -14,12 +14,12 @@ def timestamp(): def print_error(err_msg): print(err_msg) with open(err_file, 'a') as fout: - fout.write(err_msg) + fout.write(f"{timestamp()} {err_msg}\n") def print_log(log_msg): print(log_msg) with open(log_file, 'a') as fout: - fout.write(log_msg) + fout.write(f"{timestamp()} {log_msg}\n") # def read_filter_data(): # plas_filter = { line[0]: float(line[1]) for line in [line.strip("\n").split("\t") for line in open(plas_filter_file).readlines()] } @@ -37,6 +37,9 @@ def delete_dir_if_exist(path): def create_fragment_dirs(): create_dir_if_needed(frag_write_path) +def create_kmer_dirs(): + create_dir_if_needed(kmer_write_path) + # def create_sequence_dirs(): # # sequences # create_dir_if_needed(seq_plas_write_path) @@ -57,12 +60,6 @@ def create_fragment_dirs(): # create_dir_if_needed(chrom_frag_split_path) # create_dir_if_needed(ex_plas_frag_split_path) -# def create_kmer_files(): -# # kmer files -# create_dir_if_needed(plas_7mer_write_path) -# create_dir_if_needed(chrom_7mer_write_path) -# create_dir_if_needed(ex_plas_7mer_write_path) - # def create_inc_factor_dirs(): # # inc factor files # create_dir_if_needed(plas_inc_out_path) diff --git a/kmer.py b/kmer.py new file mode 100644 index 0000000..d3ba316 --- /dev/null +++ b/kmer.py @@ -0,0 +1,35 @@ +import subprocess as sp + +from progress_bar import * +from helpers import create_kmer_dirs, print_error, print_log +from constants import * +import os + +def count_kmers(threads, frag_count): + ''' Generates the kmer counts for each fragment using seq2vec + ''' + try: + print_log("Generating kmer counts...") + create_kmer_dirs() + progress_bar = create_progress_bar(kmer_bar_desc) + for filename in os.listdir(frag_write_path): + name = os.path.splitext(filename)[0] + frag_file = os.path.join(frag_write_path, filename) + write_file = os.path.join(kmer_write_path, name) + args = [ + seq2vec_path, + '-f', str(frag_file), + '-o', str(write_file), + '-t', str(threads), + '-k', str(k), + ] + sp.run(args, stdout=sp.PIPE, stderr=sp.PIPE) + + update_val = frag_count[name] if name in frag_count.keys() else 0 + update_progress_bar(progress_bar, update_val) + + close_progress_bar(progress_bar) + except Exception as err: + print_error(f"Error generating kmer counts {err}") + + print_log("Generating kmer counts completed.") diff --git a/preprocess.py b/preprocess.py index 8a7c717..be3c6dc 100644 --- a/preprocess.py +++ b/preprocess.py @@ -1,8 +1,9 @@ import os from fragment import fragment +from kmer import count_kmers from constants import * -from helpers import timestamp, print_error +from helpers import print_error def preprocess(args): ''' Preprocess sequences t0 generate kmer, biomarker features @@ -21,7 +22,8 @@ def preprocess(args): files = os.listdir(args.directory) files = [os.path.join(args.directory, file) for file in files] except Exception as err: - print_error(f"{timestamp()} Error listing input directory files: {err}\n") + print_error(f"Error listing input directory files: {err}\n") return -1 - fragment(files, args.coverage) + frag_count = fragment(files, args.coverage) + count_kmers(args.threads, frag_count) return 0