Move preprocess logic to a sub dir

MetaGSC · Nov 16, 2021 · 26ee85b · 26ee85b
1 parent 709ff81
commit 26ee85b
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Showing 6 changed files with 4 additions and 5 deletions.
diff --git a/pipeline.py b/pipeline.py
@@ -2,7 +2,7 @@
 import argparse
 
 from constants import *
-from preprocess import preprocess
+from preprocess.preprocess import preprocess
 
 def parse_user_arguements():
     parser = argparse.ArgumentParser(
@@ -42,4 +42,4 @@ def main(args):
 
 if __name__ == "__main__":
     args = parse_user_arguements()
-    main(args)
+    main(args)
diff --git a/preprocess/__init__.py b/preprocess/__init__.py
diff --git a/fragment.py → preprocess/fragment.py b/fragment.py → preprocess/fragment.py
diff --git a/kmer.py → preprocess/kmer.py b/kmer.py → preprocess/kmer.py
diff --git a/preprocess.py → preprocess/preprocess.py b/preprocess.py → preprocess/preprocess.py
@@ -1,7 +1,7 @@
 import os
 
-from fragment import fragment
-from kmer import count_kmers
+from preprocess.fragment import fragment
+from preprocess.kmer import count_kmers
 from constants import *
 from helpers import print_error
 

diff --git a/progress_bar.py b/progress_bar.py
@@ -15,4 +15,3 @@ def update_progress_bar(pbar,i):
 
 def close_progress_bar(pbar):
     pbar.close()
-
Original file line number	Diff line number	Diff line change
Expand Up		@@ -15,4 +15,3 @@ def update_progress_bar(pbar,i):

		def close_progress_bar(pbar):
		pbar.close()