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s2.3danova2.sh
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#!/bin/tcsh
# apply any data directories with variables
set data1 = /home/mengxing/FC_demo/group
# note: factor A is factor Visual, B is Audio
3dANOVA2 -type 1 \
-alevels 2 \
-blevels 2 \
-dset 1 1 "$data1/PPI.v1.stats.sub-01+tlrc.HEAD[PPI.VpAp#0_Coef]" \
-dset 1 2 "$data1/PPI.v1.stats.sub-01+tlrc.HEAD[PPI.VpAn#0_Coef]" \
-dset 2 1 "$data1/PPI.v1.stats.sub-01+tlrc.HEAD[PPI.VnAp#0_Coef]" \
-dset 2 2 "$data1/PPI.v1.stats.sub-01+tlrc.HEAD[PPI.VnAn#0_Coef]" \
-dset 1 1 "$data1/PPI.v1.stats.sub-02+tlrc.HEAD[PPI.VpAp#0_Coef]" \
-dset 1 2 "$data1/PPI.v1.stats.sub-02+tlrc.HEAD[PPI.VpAn#0_Coef]" \
-dset 2 1 "$data1/PPI.v1.stats.sub-02+tlrc.HEAD[PPI.VnAp#0_Coef]" \
-dset 2 2 "$data1/PPI.v1.stats.sub-02+tlrc.HEAD[PPI.VnAn#0_Coef]" \
-dset 1 1 "$data1/PPI.v1.stats.sub-03+tlrc.HEAD[PPI.VpAp#0_Coef]" \
-dset 1 2 "$data1/PPI.v1.stats.sub-03+tlrc.HEAD[PPI.VpAn#0_Coef]" \
-dset 2 1 "$data1/PPI.v1.stats.sub-03+tlrc.HEAD[PPI.VnAp#0_Coef]" \
-dset 2 2 "$data1/PPI.v1.stats.sub-03+tlrc.HEAD[PPI.VnAn#0_Coef]" \
-dset 1 1 "$data1/PPI.v1.stats.sub-04+tlrc.HEAD[PPI.VpAp#0_Coef]" \
-dset 1 2 "$data1/PPI.v1.stats.sub-04+tlrc.HEAD[PPI.VpAn#0_Coef]" \
-dset 2 1 "$data1/PPI.v1.stats.sub-04+tlrc.HEAD[PPI.VnAp#0_Coef]" \
-dset 2 2 "$data1/PPI.v1.stats.sub-04+tlrc.HEAD[PPI.VnAn#0_Coef]" \
-dset 1 1 "$data1/PPI.v1.stats.sub-05+tlrc.HEAD[PPI.VpAp#0_Coef]" \
-dset 1 2 "$data1/PPI.v1.stats.sub-05+tlrc.HEAD[PPI.VpAn#0_Coef]" \
-dset 2 1 "$data1/PPI.v1.stats.sub-05+tlrc.HEAD[PPI.VnAp#0_Coef]" \
-dset 2 2 "$data1/PPI.v1.stats.sub-05+tlrc.HEAD[PPI.VnAn#0_Coef]" \
-xmean 1 1 PPI:VpAp -xmean 1 2 PPI:VpAn -xmean 2 1 PPI:VnAp -xmean 2 2 PPI:VnAn \
-amean 1 PPI:Vp -amean 2 PPI:Vn -bmean 1 PPI:Ap -bmean 2 PPI:An \
-acontr 1 2 PPI:Vp-Vn -bcontr 1 2 PPI:Ap-An -xdiff 1 1 2 2 PPI:VpAp-VnAn \
-bucket $data1/group.PPI.nii.gz