Merge branch 'master' of https://github.com/MartinAchondo/XPPBE

.gitignore

@@ -68,4 +68,6 @@ build/
 .pytest_cache
 /.Lab
 
-/thesis
+/thesis
+
+/.achom

xppbe/NN/PINN.py

@@ -179,6 +179,10 @@ def solve(self,N=1000, N2=0, save_model=0, G_solve_iter=100):
 
         self.main_loop(N,N2)
 
+        import os
+        dir_save = os.path.join(self.results_path,'iterations',f'iter_{self.iter}')
+        self.save_model(dir_save)
+
         logger = logging.getLogger(__name__)
         logger.info(f' Iterations: {self.iter}')
         logger.info(" Loss: {:6.4e}".format(self.losses['TL'][self.iter-1]))

xppbe/Post/Postcode.py

@@ -75,8 +75,6 @@ def run_all(self,plot_mesh,known_method):
         self.plot_loss_validation_history(domain=1,loss='TL');
         self.plot_loss_validation_history(domain=2,loss='TL');
 
-        self.save_values_file(L2_err_method=known_method);
-
         if plot_mesh:
             self.plot_collocation_points_3D();
             self.plot_vol_mesh_3D();
@@ -95,20 +93,24 @@ def run_all(self,plot_mesh,known_method):
         self.plot_phi_contour(value='react');
         self.plot_interface_3D(variable='phi');
         self.plot_interface_3D(variable='dphi');
+        self.save_values_file();
 
         if not known_method is None:
 
             if known_method == 'analytic_Born_Ion':
+                self.plot_G_solv_history('analytic_Born_Ion');
+                self.save_values_file(L2_err_method='analytic_Born_Ion');
                 self.plot_aprox_analytic();
                 self.plot_aprox_analytic(value='react');
                 self.plot_aprox_analytic(zoom=True);
                 self.plot_aprox_analytic(zoom=True, value='react');
                 self.plot_line_interface();
                 self.plot_line_interface(value='react');
                 self.plot_line_interface(plot='du');
-                self.plot_G_solv_history(method='analytic_Born_Ion');
+
             else:
                 self.plot_G_solv_history(known_method);
+                self.save_values_file(L2_err_method=known_method);
                 self.plot_phi_line_aprox_known(known_method, value='react',theta=0, phi=np.pi/2)
                 self.plot_phi_line_aprox_known(known_method, value='react',theta=np.pi/2, phi=np.pi/2)
                 self.plot_phi_line_aprox_known(known_method, value='react', theta=np.pi/2, phi=np.pi)

xppbe/Simulation.py

@@ -141,6 +141,7 @@ def postprocessing(self, run_all=False, jupyter=False, plot_mesh=False, known_me
 
         if self.domain_properties['molecule'] == 'born_ion':
             from xppbe.Post.Postcode import Born_Ion_Postprocessing as Postprocessing
+            known_method='analytic_Born_Ion'
         else:
             from xppbe.Post.Postcode import Postprocessing