GitHub - Madhurjya-100/Tutorials_WGCNA-R-Package_Test-3: We provide three introductory tutorials (I - III), each split into smaller sections for easier reading, and we link to more advanced tutorials that describe research analyses in which we used WGCNA.

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We provide three introductory tutorials (I - III), each split into smaller sections for easier reading, and we link to more advanced tutorials that describe research analyses in which we used WGCNA.

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A scatterplot of Gene Signiﬁcance (GS) for weight vs. Module Membership (MM) in the brown module. There is a highly signiﬁcant correlation between GS and MM in this module..png		A scatterplot of Gene Signiﬁcance (GS) for weight vs. Module Membership (MM) in the brown module. There is a highly signiﬁcant correlation between GS and MM in this module..png
Analysis of network topology for various soft-thresholding powers..png		Analysis of network topology for various soft-thresholding powers..png
Analysis of network topology for various soft-thresholding powers_2.png		Analysis of network topology for various soft-thresholding powers_2.png
ClinicalTraits.csv		ClinicalTraits.csv
Cluster dendogram_Merged Dynamic.png		Cluster dendogram_Merged Dynamic.png
Clustering dendrogram of genes, with dissimilarity based on topological overlap, together with assigned module colors.png		Clustering dendrogram of genes, with dissimilarity based on topological overlap, together with assigned module colors.png
Clustering dendrogram of genes, with dissimilarity based on topological overlap.png		Clustering dendrogram of genes, with dissimilarity based on topological overlap.png
Clustering dendrogram of genes.png		Clustering dendrogram of genes.png
Clustering dendrogram of samples based on their Euclidean distance..png		Clustering dendrogram of samples based on their Euclidean distance..png
Clustering dendrograms of genes, with dissimilarity based on topological overlap, together with assigned module colors. There is one gene dendrogram per block..png		Clustering dendrograms of genes, with dissimilarity based on topological overlap, together with assigned module colors. There is one gene dendrogram per block..png
Clustering dendrograms of genes, with dissimilarity based on topological overlap, together with assigned module colors..png		Clustering dendrograms of genes, with dissimilarity based on topological overlap, together with assigned module colors..png
Consensus gene dendrogram and module colors.png		Consensus gene dendrogram and module colors.png
CytoscapeInput-edges-brown-red.txt		CytoscapeInput-edges-brown-red.txt
CytoscapeInput-nodes-brown-red.txt		CytoscapeInput-nodes-brown-red.txt
FemaleLiver-01-dataInput.RData		FemaleLiver-01-dataInput.RData
FemaleLiver-02-networkConstruction-auto.RData		FemaleLiver-02-networkConstruction-auto.RData
FemaleLiver-02-networkConstruction-stepByStep.RData		FemaleLiver-02-networkConstruction-stepByStep.RData
GOEnrichmentTable.csv		GOEnrichmentTable.csv
Gene dendrogram and module colors in block.png		Gene dendrogram and module colors in block.png
Gene dendrogram obtained in the single-block analysis together with the corresponding single-block module colors and the module colors obtained by block-wise clustering.png		Gene dendrogram obtained in the single-block analysis together with the corresponding single-block module colors and the module colors obtained by block-wise clustering.png
GeneAnnotation.csv		GeneAnnotation.csv
I.1. Tutorial.R		I.1. Tutorial.R
LiverFemale3600.csv		LiverFemale3600.csv
LiverMale3600.csv		LiverMale3600.csv
LocusLinkIDs-all.txt		LocusLinkIDs-all.txt
LocusLinkIDs-brown.txt		LocusLinkIDs-brown.txt
LocusLinkIDs-red.txt		LocusLinkIDs-red.txt
LocusLinkIDs-salmon.txt		LocusLinkIDs-salmon.txt
MBI18001_BI452_Codes_WGCNA.txt		MBI18001_BI452_Codes_WGCNA.txt
MBI18001_BI452_Codes_WGCNA_T2.txt		MBI18001_BI452_Codes_WGCNA_T2.txt
Mean Connectivity.png		Mean Connectivity.png
Module-trait_relationship.png		Module-trait_relationship.png
Sample clustering to detect outliers.png		Sample clustering to detect outliers.png
Scale independence.png		Scale independence.png
VisANTInput-brown-top30.txt		VisANTInput-brown-top30.txt
VisANTInput-brown.txt		VisANTInput-brown.txt
femaleMouseTOM-blockwise-block.1.RData		femaleMouseTOM-blockwise-block.1.RData
geneInfo.csv		geneInfo.csv

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We provide three introductory tutorials (I - III), each split into smaller sections for easier reading, and we link to more advanced tutorials that describe research analyses in which we used WGCNA.

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