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Copy pathsingle_olive_iclamp.xml
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single_olive_iclamp.xml
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<?xml version="1.0"?>
<Lems xmlns="http://www.neuroml.org/lems/0.7.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/lems/0.7.2 https://raw.github.com/LEMS/LEMS/development/Schemas/LEMS/LEMS_v0.7.2.xsd">
<Target component="sim1" reportFile="simulator.props" timesFile="time.dat"/>
<!--Include standard NeuroML 2 ComponentType definitions-->
<Include file="Cells.xml"/>
<Include file="Networks.xml"/>
<Include file="Simulation.xml"/>
<!-- Channel/synapse files-->
<Include file="na_s.channel.nml"/>
<Include file="kdr.channel.nml"/>
<Include file="k.channel.nml"/>
<Include file="cal.channel.nml"/>
<Include file="leak.channel.nml"/>
<Include file="ExpTime.nml"/>
<!-- dend -->
<Include file="cah.channel.nml"/>
<Include file="kca.channel.nml"/>
<Include file="h.channel.nml"/>
<Include file="ca.nml"/>
<!-- axon -->
<Include file="na_a.channel.nml"/>
<!-- Cell files-->
<Include file="olive.cell.nml"/>
<!-- Network file-->
<Include file="iclamp_single_cell.net.nml"/>
<!--Note: this could be: Simulation id="sim1" ... , but Component type="Simulation" ...
is used to allow validation of this file according to the LEMS schema specified above...-->
<Component type="Simulation" id="sim1" length="2000 ms" step="0.025 ms" target="net">
<Display id="d1" title="voltage" xmin="0" xmax="1000" ymin="-100.0" ymax="100" timeScale="1ms">
<Line id="Vm - soma" timeScale="1ms" quantity="pop/0/cell/0/v" scale="1 mV" color="#e41a1c"/>
<Line id="Vm - dend" timeScale="1ms" quantity="pop/0/cell/1/v" scale="1 mV" color="#4daf4a"/>
<Line id="Vm - axon" timeScale="1ms" quantity="pop/0/cell/2/v" scale="1 mV" color="#377eb8"/>
</Display>
<OutputFile id="outf" fileName="single_olive_iclamp.dat">
<OutputColumn id="v" quantity="pop/0/cell/0/v"/>
<OutputColumn id="v" quantity="pop/0/cell/1/v"/>
<OutputColumn id="v" quantity="pop/0/cell/2/v"/>
<OutputColumn id="v" quantity="pop/0/cell/1/caConc"/>
<!--
<OutputColumn id="hna_soma" quantity="pop/0/cell/biophys/membraneProperties/na_s_soma/na_s/h/q"/>
<OutputColumn id="nk" quantity="pop/0/cell/biophys/membraneProperties/k_soma/k/n/q"/>
<OutputColumn id="nkdr" quantity="pop/0/cell/biophys/membraneProperties/kdr_soma/kdr/n/q"/>
<OutputColumn id="kcal_k" quantity="pop/0/cell/biophys/membraneProperties/cal_soma/cal/k/q"/>
<OutputColumn id="lcal_l" quantity="pop/0/cell/biophys/membraneProperties/cal_soma/cal/l/q"/>
<OutputColumn id="ca" quantity="pop/0/cell/caConc"/>
<OutputColumn id="ica" quantity="pop/0/cell/iCa"/>
<OutputColumn id="zkca" quantity="pop/0/cell/biophys/membraneProperties/kca_dend/kca/z/q"/>
<OutputColumn id="rcah" quantity="pop/0/cell/biophys/membraneProperties/cah_dend/cah/r/q"/>
<OutputColumn id="hna_axon" quantity="pop/0/cell/biophys/membraneProperties/na_axon/na_a/h/q"/>
<OutputColumn id="ncah" quantity="pop/0/cell/biophys/membraneProperties/k_axon/k/n/q"/>
-->
</OutputFile>
</Component>
</Lems>