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Chi is an open source Python package hosted on GitHub, which can be used to model dose response dynamics.
All features of our software are described in detail in our full API documentation.
- Install sundials
Chi uses the open-source package Myokit to solve mechanistic models and compute their sensitivities efficiently. Myokit does this using sundials' CVODESS, which need to be installed with:
- On Ubuntu:
apt-get install libsundials-dev- On MacOS:
brew install sundials- On Windows: No action required. Myokit will install sundial automatically.
- Install chi
pip install chi-drmYou can now use chi's functionality by importing it
import chiTutorials and more detailed explanations on how to use chi are currently under development.
Pull requests are welcome. For major changes, please open an issue first to discuss what you would like to change.
Please make sure to update tests as appropriate.