FIles for Phase 1 of eiACUAC to Protocol. Updates the eriCIC Data to …

…add Base Prtocol
LabKey · Jul 24, 2024 · 65c9542 · 65c9542
1 parent 41f2c11
commit 65c9542
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Showing 4 changed files with 34 additions and 23 deletions.
diff --git a/onprc_ehr/resources/etls/eIACUCtoPrimeUpdate.xml b/onprc_ehr/resources/etls/eIACUCtoPrimeUpdate.xml
@@ -0,0 +1,16 @@
+<etl xmlns="http://labkey.org/etl/xml">
+    <name>eiACUCtoPrimeBaseProtocol</name>
+    <description>Transfers from the eIACUC Import tables to the Prime tables in ONPRC_EHR</description>
+    <transforms>
+
+        <transform id="step1a">
+            <description>Transfer to Protocols</description>
+            <source queryName="PRIME_VIEW_PROTOCOLS" schemaName="eIACUC"/>
+            <destination queryName="eIACUC_PRIME_VIEW_PROTOCOLS" schemaName="ONPRC_EHR" targetOption="truncate"/>
+        </transform>
+<!--//Need a query that has needed fields for BaseProtocol and revisionNumber and then inserts that into eIACUC_Prime_View_Protocols
+        Also only want latest data-->
+
+    </transforms>
+
+</etl>
diff --git a/...pts/sqlserver/onprc_ehr-24.003-24.004.sql → ...pts/sqlserver/onprc_ehr-24.001-24.002.sql b/...pts/sqlserver/onprc_ehr-24.003-24.004.sql → ...pts/sqlserver/onprc_ehr-24.001-24.002.sql
diff --git a/onprc_ehr/resources/schemas/dbscripts/sqlserver/onprc_ehr-24.002-24.003.sql b/onprc_ehr/resources/schemas/dbscripts/sqlserver/onprc_ehr-24.002-24.003.sql
@@ -1,4 +1,3 @@
-================================================
 -- Template generated from Template Explorer using:
 -- Create Procedure (New Menu).SQL
 --
@@ -19,62 +18,56 @@ GO
 -- Description:	Iniitial Stage of update of eIACUC to protocol processing
 -- =============================================
 
-CREATE PROCEDURE onprc_ehr.eIACUCBaseProtocol
+ALTER PROCEDURE onprc_ehr.eIACUCBaseProtocol
 
     AS
 BEGIN
 	-- SET NOCOUNT ON added to prevent extra result sets from
 	-- interfering with SELECT statements.
 	SET NOCOUNT ON;
 --Drop Temporary Table
-DROP TABLE #eIACUCBaseProtocol
+--DROP TABLE #eIACUCBaseProtocol
 -- Insert statements for procedure here
 cREATE tABLE #eIACUCBaseProtocol
 (BaseProtocol varchar(50) Not Null,
- RevisionNumber varchar(20) Not Null,
+ RenewalNumber varchar(20) Not Null,
  Protocol_Id varchar(50) Not Null,
  Last_Modified varchar(30) not null ,
- LatestInstance varchar (30) Not Null);
+ LatestREnewal varchar (30) Not Null);
 
 --Populate the temporary table from query
-Insert INTO #eIACUCBaseProtocol(BaseProtocol,RevisionNumber,Protocol_id,Last_Modified,LatestInstance)
+Insert INTO #eIACUCBaseProtocol(BaseProtocol,RenewalNumber,Protocol_id,Last_Modified,LatestRenewal)
 Select
 
     Case when len(p.protocol_id) > 10 then substring(p.protocol_id, 6,15)
          else p.protocol_id
         End as BaseProtocol,
     Case when len(p.protocol_id) > 10 then substring(p.protocol_id, 1,4)
          else 'Original'
-        End as RevisionNumber,
+        End as RenewalNumber,
     protocol_id,
     Last_Modified,
-    ' ' as LatestInstance
+    ' ' as LatestRenewal
 
 from onprc_ehr.eIACUC_PRIME_VIEW_PROTOCOLS p
 
 Update p1
 Set p1.BaseProtocol = e.BaseProtocol
 
-    from onprc_ehr.eIACUC_PRIME_VIEW_PROTOCOLS p1 join #eIACUCUpdate e on p1.protocol_id = e.Protocol_Id
+    from onprc_ehr.eIACUC_PRIME_VIEW_PROTOCOLS p1 join #eIACUCBaseProtocol e on p1.protocol_id = e.Protocol_Id
 
 Update p1
-Set p1.RevisionNumber = e.RevisionNumber
+Set p1.ReNewalNumber = e.ReNewalNumber
 
-    from onprc_ehr.eIACUC_PRIME_VIEW_PROTOCOLS p1 join #eIACUCUpdate e on p1.protocol_id = e.Protocol_Id
+    from onprc_ehr.eIACUC_PRIME_VIEW_PROTOCOLS p1 join #eIACUCBaseProtocol e on p1.protocol_id = e.Protocol_Id
 
+Update p1
+Set p1.LatestRenewal = e.LatestRenewal
 
-
---Now will limit the records to be inserted to most recent record
-
-
-update p
-Set p.updateStatus = 'Update'
-
-    from onprc_ehr.eIACUC_PRIME_VIEW_PROTOCOLS p
-where (p.BaseProtocol is not null and p.last_Modified = (Select Max(p1.Last_Modified) from onprc_ehr.eIACUC_PRIME_VIEW_PROTOCOLS p1 where p1.BaseProtocol = p.BaseProtocol))
-
+    from onprc_ehr.eIACUC_PRIME_VIEW_PROTOCOLS p1 join #eIACUCBaseProtocol e on p1.protocol_id = e.Protocol_Id
 
 
+--Now will limit the records to be inserted to most recent record
 
 
 END

diff --git a/onprc_ehr/resources/schemas/onprc_ehr.xml b/onprc_ehr/resources/schemas/onprc_ehr.xml
@@ -735,8 +735,10 @@
             <column columnName="PPQ_Numbers"/>
             <column columnName="Description"/>
             <column columnName="BaseProtocol"/>
-            <column columnName="RevisionNumber"/>
-            <column columnName="UpdateStatus"/>
+            <column columnName="RenewalNumber"/>
+            <column columnName="LatestRenewal"/>
+
+
         </columns>
     </table>
     <table tableName="PotentialDam_source" tableDbType="TABLE">