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fix(docs): remove ecosystem tables
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LDeakin committed Jan 16, 2025
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Expand Up @@ -9,6 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Changed
- Use new language/library features added between Rust 1.78-1.82 (internal)
- Cleanup root docs and README removing ZEPs table and ecosystem table

### Fixed
- New clippy lints
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133 changes: 68 additions & 65 deletions README.md
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# zar<ins>rs</ins>

[![Latest Version](https://img.shields.io/crates/v/zarrs.svg)](https://crates.io/crates/zarrs)
[![zarrs documentation](https://docs.rs/zarrs/badge.svg)](https://docs.rs/zarrs)
[![zarrs documentation](https://docs.rs/zarrs/badge.svg)][documentation]
![msrv](https://img.shields.io/crates/msrv/zarrs)
[![downloads](https://img.shields.io/crates/d/zarrs)](https://crates.io/crates/zarrs)
[![build](https://github.com/LDeakin/zarrs/actions/workflows/ci.yml/badge.svg)](https://github.com/LDeakin/zarrs/actions/workflows/ci.yml)
[![codecov](https://codecov.io/gh/LDeakin/zarrs/graph/badge.svg?token=OBKJQNAZPP)](https://codecov.io/gh/LDeakin/zarrs)
[![DOI](https://zenodo.org/badge/695021547.svg)](https://zenodo.org/badge/latestdoi/695021547)

`zarrs` is a Rust library for the [Zarr](https://zarr.dev) storage format for multidimensional arrays and metadata. It supports [Zarr V3](https://zarr-specs.readthedocs.io/en/latest/v3/core/v3.0.html) and a [V3 compatible subset](https://docs.rs/zarrs/latest/zarrs/#implementation-status) of [Zarr V2](https://zarr-specs.readthedocs.io/en/latest/v2/v2.0.html).
`zarrs` is a Rust library for the [Zarr] storage format for multidimensional arrays and metadata. It supports [Zarr V3] and a V3 compatible subset of [Zarr V2].

A changelog can be found [here](https://github.com/LDeakin/zarrs/blob/main/CHANGELOG.md).
Correctness issues with past versions are [detailed here](https://github.com/LDeakin/zarrs/blob/main/doc/correctness_issues.md).
A changelog can be found [here][CHANGELOG].
Correctness issues with past versions are [detailed here][correctness_issues].

Developed at the [Department of Materials Physics](https://physics.anu.edu.au/research/mp/), Australian National University, Canberra, Australia.
Developed at the [Department of Materials Physics, Australian National University, Canberra, Australia].

> [!TIP]
> If you are a Python user, check out [`zarrs-python`](https://github.com/ilan-gold/zarrs-python).
> It includes a high-performance codec pipeline for the reference [`zarr-python`](https://github.com/zarr-developers/zarr-python) implementation.
> If you are a Python user, check out [`zarrs-python`].
> It includes a high-performance codec pipeline for the reference [`zarr-python`] implementation.
## Getting Started
- Review the [implementation status](https://docs.rs/zarrs/latest/zarrs/#implementation-status), [array support](https://docs.rs/zarrs/latest/zarrs/#array-support), and [storage support](https://docs.rs/zarrs/latest/zarrs/#storage-support).
- Read [The `zarrs` Book](https://book.zarrs.dev).
- View the [examples](https://github.com/LDeakin/zarrs/tree/main/zarrs/examples) and [the example below](#example).
- Read the [documentation](https://docs.rs/zarrs/latest/zarrs/). [`array::Array`](https://docs.rs/zarrs/latest/zarrs/array/struct.Array.html) is a good place to start.
- Check out the [`zarrs` ecosystem](#zarrs-ecosystem).
- Review the [implementation status] ([zarr version support], [array support], [storage support], and the [`zarrs` ecosystem](#zarrs-ecosystem)).
- Read [The `zarrs` Book].
- View the [examples] and [the example below](#example).
- Read the [documentation].

## Example
```rust
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## `zarrs` Ecosystem

| Crate | Docs / Description |
| --------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------- |
| **Core** | |
| [![zarrs_ver]](https://crates.io/crates/zarrs) [zarrs] | [![docs]](https://docs.rs/zarrs) The core library for manipulating Zarr hierarchies |
| [![zarrs_metadata_ver]](https://crates.io/crates/zarrs_metadata) [zarrs_metadata] | [![docs]](https://docs.rs/zarrs_metadata) Zarr metadata support (re-exported as `zarrs::metadata`) |
| [![zarrs_storage_ver]](https://crates.io/crates/zarrs_storage) [zarrs_storage] | [![docs]](https://docs.rs/zarrs_storage) The storage API for `zarrs` (re-exported as `zarrs::storage`) |
| **Stores** | |
| [![zarrs_filesystem_ver]](https://crates.io/crates/zarrs_filesystem) [zarrs_filesystem] | [![docs]](https://docs.rs/zarrs_filesystem) A filesystem store (re-exported as `zarrs::filesystem`) |
| [![zarrs_object_store_ver]](https://crates.io/crates/zarrs_object_store) [zarrs_object_store] | [![docs]](https://docs.rs/zarrs_object_store) [`object_store`](https://docs.rs/object_store/latest/object_store/) store support |
| [![zarrs_opendal_ver]](https://crates.io/crates/zarrs_opendal) [zarrs_opendal] | [![docs]](https://docs.rs/zarrs_opendal) [`opendal`](https://docs.rs/opendal/latest/opendal/) store support |
| [![zarrs_http_ver]](https://crates.io/crates/zarrs_http) [zarrs_http] | [![docs]](https://docs.rs/zarrs_http) A synchronous http store |
| [![zarrs_zip_ver]](https://crates.io/crates/zarrs_zip) [zarrs_zip] | [![docs]](https://docs.rs/zarrs_zip) A storage adapter for zip files |
| [![zarrs_icechunk_ver]](https://crates.io/crates/zarrs_icechunk) [zarrs_icechunk] | [![docs]](https://docs.rs/zarrs_icechunk) [`icechunk`](https://docs.rs/icechunk/latest/icechunk/) store support |
| **Bindings** | |
| [![zarrs_python_ver]](https://pypi.org/project/zarrs/) [zarrs-python] | [![docs]](https://zarrs-python.readthedocs.io/en/latest/) A codec pipeline for [zarr-python] |
| [![zarrs_ffi_ver]](https://crates.io/crates/zarrs_ffi) [zarrs_ffi] | [![docs]](https://docs.rs/zarrs_ffi) A subset of `zarrs` exposed as a C/C++ API |
| **Zarr Metadata Conventions** | |
| [![ome_zarr_metadata_ver]](https://crates.io/crates/ome_zarr_metadata) [ome_zarr_metadata] | [![docs]](https://docs.rs/ome_zarr_metadata) A library for OME-Zarr (previously OME-NGFF) metadata |

[docs]: https://img.shields.io/badge/docs-brightgreen
[zarrs_ver]: https://img.shields.io/crates/v/zarrs
[zarrs]: https://github.com/LDeakin/zarrs/tree/main/zarrs
[zarrs_metadata_ver]: https://img.shields.io/crates/v/zarrs_metadata
[zarrs_metadata]: https://github.com/LDeakin/zarrs/tree/main/zarrs_metadata
[zarrs_storage_ver]: https://img.shields.io/crates/v/zarrs_storage
[zarrs_storage]: https://github.com/LDeakin/zarrs/tree/main/zarrs_storage
[zarrs_filesystem_ver]: https://img.shields.io/crates/v/zarrs_filesystem
[zarrs_filesystem]: https://github.com/LDeakin/zarrs/tree/main/zarrs_filesystem
[zarrs_http_ver]: https://img.shields.io/crates/v/zarrs_http
[zarrs_http]: https://github.com/LDeakin/zarrs/tree/main/zarrs_http
[zarrs_object_store_ver]: https://img.shields.io/crates/v/zarrs_object_store
[zarrs_object_store]: https://github.com/LDeakin/zarrs/tree/main/zarrs_object_store
[zarrs_opendal_ver]: https://img.shields.io/crates/v/zarrs_opendal
[zarrs_opendal]: https://github.com/LDeakin/zarrs/tree/main/zarrs_opendal
[zarrs_zip_ver]: https://img.shields.io/crates/v/zarrs_zip
[zarrs_zip]: https://github.com/LDeakin/zarrs/tree/main/zarrs_zip
[zarrs_icechunk_ver]: https://img.shields.io/crates/v/zarrs_icechunk
[zarrs_icechunk]: https://github.com/LDeakin/zarrs_icechunk
[zarrs_ffi_ver]: https://img.shields.io/crates/v/zarrs_ffi
[zarrs_ffi]: https://github.com/LDeakin/zarrs_ffi
[zarrs_python_ver]: https://img.shields.io/pypi/v/zarrs
[zarrs-python]: https://github.com/ilan-gold/zarrs-python
[zarr-python]: https://github.com/zarr-developers/zarr-python
[ome_zarr_metadata_ver]: https://img.shields.io/crates/v/ome_zarr_metadata
[ome_zarr_metadata]: https://github.com/LDeakin/rust_ome_zarr_metadata

#### [zarrs_tools]
[![zarrs_tools_ver]](https://crates.io/crates/zarrs_tools) [![zarrs_tools_doc]](https://docs.rs/zarrs_tools)

[zarrs_tools]: https://github.com/LDeakin/zarrs_tools
[zarrs_tools_ver]: https://img.shields.io/crates/v/zarrs_tools.svg
[zarrs_tools_doc]: https://docs.rs/zarrs_tools/badge.svg
### Core
- [`zarrs`]: The core library for manipulating Zarr hierarchies.
- [`zarrs_metadata`]: Zarr metadata support (re-exported as `zarrs::metadata`).
- [`zarrs_storage`]: The storage API for `zarrs` (re-exported as `zarrs::storage`).

### Stores
- [`zarrs_filesystem`]: A filesystem store (re-exported as `zarrs::filesystem`).
- [`zarrs_object_store`]: [`object_store`] store support.
- [`zarrs_opendal`]: [`opendal`] store support.
- [`zarrs_http`]: A synchronous http store.
- [`zarrs_zip`]: A storage adapter for zip files.
- [`zarrs_icechunk`]: [`icechunk`] store support.

### Bindings
- [`zarrs-python`]: A high-performance codec pipeline for [`zarr-python`].
- [`zarrs_ffi`]: A subset of `zarrs` exposed as a C/C++ API.

### Zarr Metadata Conventions
- [`ome_zarr_metadata`]: A library for OME-Zarr (previously OME-NGFF) metadata.

### Tools
- [`zarrs_tools`]: Various tools for creating and manipulating Zarr V3 data with the zarrs rust crate
- A reencoder that can change codecs, chunk shape, convert Zarr V2 to V3, etc.
- Create an [OME-Zarr](https://ngff.openmicroscopy.org/latest/) hierarchy from a Zarr array.
- Create an [OME-Zarr] hierarchy from a Zarr array.
- Transform arrays: crop, rescale, downsample, gradient magnitude, gaussian, noise filtering, etc.
- Benchmarking tools and performance benchmarks of `zarrs`.

Expand All @@ -154,3 +122,38 @@ println!("{array_ndarray:4}");
- the MIT license [LICENSE-MIT](./LICENCE-MIT) or <http://opensource.org/licenses/MIT>, at your option.

Unless you explicitly state otherwise, any contribution intentionally submitted for inclusion in the work by you, as defined in the Apache-2.0 license, shall be dual licensed as above, without any additional terms or conditions.

[CHANGELOG]: https://github.com/LDeakin/zarrs/blob/main/CHANGELOG.md
[correctness_issues]: https://github.com/LDeakin/zarrs/blob/main/doc/correctness_issues.md
[implementation status]: https://docs.rs/zarrs/latest/zarrs/#implementation-status
[zarr version support]: https://docs.rs/zarrs/latest/zarrs/#zarr-version-support
[array support]: https://docs.rs/zarrs/latest/zarrs/#array-support
[storage support]: https://docs.rs/zarrs/latest/zarrs/#storage-support
[examples]: https://github.com/LDeakin/zarrs/tree/main/zarrs/examples
[documentation]: https://docs.rs/zarrs/latest/zarrs/
[The `zarrs` Book]: https://book.zarrs.dev

[`zarrs`]: https://github.com/LDeakin/zarrs/tree/main/zarrs
[`zarrs_metadata`]: https://github.com/LDeakin/zarrs/tree/main/zarrs_metadata
[`zarrs_storage`]: https://github.com/LDeakin/zarrs/tree/main/zarrs_storage
[`zarrs_filesystem`]: https://github.com/LDeakin/zarrs/tree/main/zarrs_filesystem
[`zarrs_http`]: https://github.com/LDeakin/zarrs/tree/main/zarrs_http
[`zarrs_object_store`]: https://github.com/LDeakin/zarrs/tree/main/zarrs_object_store
[`zarrs_opendal`]: https://github.com/LDeakin/zarrs/tree/main/zarrs_opendal
[`zarrs_zip`]: https://github.com/LDeakin/zarrs/tree/main/zarrs_zip
[`zarrs_icechunk`]: https://github.com/LDeakin/zarrs_icechunk
[`zarrs_ffi`]: https://github.com/LDeakin/zarrs_ffi
[`zarrs-python`]: https://github.com/ilan-gold/zarrs-python
[`zarr-python`]: https://github.com/zarr-developers/zarr-python
[`zarrs_tools`]: https://github.com/LDeakin/zarrs_tools
[`ome_zarr_metadata`]: https://github.com/LDeakin/rust_ome_zarr_metadata
[`object_store`]: https://github.com/apache/arrow-rs/tree/main/object_store
[`opendal`]: https://github.com/apache/OpenDAL
[`icechunk`]: https://github.com/earth-mover/icechunk

[Zarr]: https://zarr.dev
[Zarr V3]: https://zarr-specs.readthedocs.io/en/latest/v3/core/v3.0.html
[Zarr V2]: https://zarr-specs.readthedocs.io/en/latest/v2/v2.0.html
[OME-Zarr]: https://ngff.openmicroscopy.org/latest/

[Department of Materials Physics, Australian National University, Canberra, Australia]: https://physics.anu.edu.au/research/mp/
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