From 16d7512e7007f9493c618bb94392b03ff1dd6fcc Mon Sep 17 00:00:00 2001 From: Benjamin James Date: Fri, 12 Apr 2024 06:49:52 -0400 Subject: [PATCH] jaspar 2024 FINCEN emc SDI TDR Power lines DEADBEEF Crowell Heroin BCCI Egret Fort Meade GEODSS al-Qa'ida Transportation security Denial of service --- benj/integration.py | 2 +- scripts/integrate_atac.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/benj/integration.py b/benj/integration.py index b35f51d..edb1a3e 100644 --- a/benj/integration.py +++ b/benj/integration.py @@ -11,7 +11,7 @@ def integrate_atac(adata, output=None, batch=None, use_harmony:bool=False, use_b min_n_cells_by_counts:int=2, cor_cutoff:float=0.8, max_iter_harmony:int=50, leiden_n_iterations:int=-1, - genome:str=None, release:str="JASPAR2022", species:int=-1, + genome:str=None, release:str="JASPAR2024", species:int=-1, plot=[], save_data:bool=False, qc_cols=["log1p_total_counts"], sw=None, **kwargs): import os diff --git a/scripts/integrate_atac.py b/scripts/integrate_atac.py index d80e2ae..40b6267 100755 --- a/scripts/integrate_atac.py +++ b/scripts/integrate_atac.py @@ -14,7 +14,7 @@ ap.add_argument("--prefix", default="C") ap.add_argument("--genome", required=True) ap.add_argument("-c", "--min-cells-per-peak", type=int, default=10, dest="min_n_cells_by_counts") - ap.add_argument("-j", "--jaspar", default="JASPAR2022") + ap.add_argument("-j", "--jaspar", default="JASPAR2024") ap.add_argument("-s", "--species", type=int, required=True) ap.add_argument("--cor-cutoff", type=float, default=0.8) ap.add_argument("--no-use-harmony", dest="use_harmony", action="store_false")