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README.md

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+# Measure Cell Size in 3D
+
+Results:
+
+![result](https://github.com/Kafri-Lab/Cell-3D-Image-Analysis/blob/master/readme_images/segmentation.gif "result")
+
+
+## Project Layout
+
+| Directory or file            | Description                                                                                        |
+|------------------------------|----------------------------------------------------------------------------------------------------|
+| "islet_segmentation_pipeline.m" | Main code file  |
+| "islet_functions/"              | Contains functions to segment images, tally cell sizes, and visualize results.  |
+
+## Project Status
+
+I'm hoping to clean up the code. Open an issue if you need help.
+
+## Example of Input Images
+
+![result](https://github.com/Kafri-Lab/Cell-3D-Image-Analysis/blob/master/readme_images/input_example_stack.png "result")
+
+## More Results:
+
+![result](https://github.com/Kafri-Lab/Cell-3D-Image-Analysis/blob/master/readme_images/good_seeding.gif "result")
+![result](https://github.com/Kafri-Lab/Cell-3D-Image-Analysis/blob/master/readme_images/cell_size_plot.png "result")
+![result](https://github.com/Kafri-Lab/Cell-3D-Image-Analysis/blob/master/readme_images/3D_render.gif "result")
+