grs_launcher.pbs

#Lancer grs à travers un job PBS  :

#!/bin/bash

#PBS -N grs
#PBS -l select=1:ncpus=16:mem=32gb
#PBS -l place=pack
#PBS -l walltime=24:00:00

#load avail module for conda, snap and jdk
module load netcdf snap/8.0 conda jdk/1.8.0_112

#otb-depends/7.0-python3.6.5

#set the variable environment for je jpy and snap use
export JDK_HOME=$JDKHOME
export JAVAHOME=$JAVA_HOME
export SNAP_HOME=$SNAPHOME
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:.

##activate conda environement python 3.6
conda activate /work/scratch/harmelt/grs_py3.6
cd /work/ALT/swot/aval/OBS2CO/git/grs2


#python exe/grs_tiles_cnes.py

grs /datalake/S2-L1C//33PVQ/2020/11/14/S2B_MSIL1C_20201114T092239_N0209_R093_T33PVQ_20201114T113340.SAFE --odir /datalake/watcal/S2-L2GRS/test \
    --aerosol cams_forecast --maja /datalake/S2-L2A-THEIA/33PVQ/2020/11/14/SENTINEL2B_20201114-093704-775_L2A_T33PVQ_C_V2-2/SENTINEL2B_20201114-093704-775_L2A_T33PVQ_C_V2-2_MTD_ALL.xml \
    --dem