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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

[Unreleased]

  • Fix references.md link in citation of README.md
  • Add Nextflow to references.md
  • Fix pool_and_psuedoreplicate.py to run single experiment
  • Add test data for test_pool_and_pseudoreplicate
  • Add PlotProfile Option
  • Add Python version to MultiQC
  • Add and Update tests
  • Use GTF files instead of TxDb and org libraries in Annotate Peaks
  • Make gtf and geneName files as param inputs
  • Fix xcor to increase file size for --random-source
  • Fix skip diff test for paired-end data

[publish_1.0.6 ] - 2019-05-31

Added

  • MIT LICENSE
  • Check for correct genome input
  • Check for correct output for motif serach

Fixed

  • Path to reference fasta file

[publish_1.0.5 ] - 2019-05-16

Fixed

  • Retitled documentation for skipDiff and skipMotif to be more clear
  • Add missing python module for motif search
  • Updated links for phantompeaktools and references
  • Fix callPeaks for single control experiments

[publish_1.0.3 ] - 2019-04-23

Fixed

  • Variable name for design file for Astrocyte
  • File path for design file to work for Astrocyte

[publish_1.0.0 ] - 2019-04-23

Initial release of pipeline