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README-jaqpot.md

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Running the Jaqpot models

Build the docker image

docker-compose build jaqpot

Enter the container:

docker run -it --rm -v $PWD:$PWD -w $PWD -u 1000:1000 informaticsmatters/vs-jaqpot:latest bash

Set the environment variable for the API

export JAQPOT_API_KEY=...

Check it runs:

./jaqpot_model_exec.py --help

Run a model:

./jaqpot_model_exec.py -i data/100.smi -m K1J1JzuZJxjY1q8YCD3h