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Merge pull request #132 from Image-X-Institute/update_broken_links
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fixed broken links in the example readmes...
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bwheelz36 authored Mar 26, 2024
2 parents 0b64a97 + 1613133 commit 5f7fa42
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4 changes: 2 additions & 2 deletions examples/ApertureOptimisation/README.md
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Expand Up @@ -29,12 +29,12 @@ When you have finished working through this example you should have a working di

## Copy the base topas files

The code will need to know where your base model is stored. The base model for this application is available [here](https://cloudstor.aarnet.edu.au/plus/s/Rpyc2nv83zxBUXy). Download and unzip this folder, and place the contents inside your working directory (ApertureOptExample in this example). Note that in principle these files can reside anywhere; we are only using the working directory to make this example as simple as possible!
The code will need to know where your base model is stored. The base model for this application is available [here](https://zenodo.org/records/10369317). Download and unzip this folder, and place the contents inside your working directory (ApertureOptExample in this example). Note that in principle these files can reside anywhere; we are only using the working directory to make this example as simple as possible!

> hint: if you are running this example inside a command window use the following commands:
```bash
wget -O start_files.zip https://cloudstor.aarnet.edu.au/plus/s/Rpyc2nv83zxBUXy/download
wget -O start_files.zip "https://zenodo.org/records/10369317/files/SimpleCollimatorExample_TopasFiles(2).zip?download=1"
# ^this is all one line!
unzip start_files.zip
rm start_files.zip
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4 changes: 2 additions & 2 deletions examples/NoisyOptimisation/README.md
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Expand Up @@ -124,7 +124,7 @@ cd n_particles_500000/scripts
cd ../..
```

You can go ahead and generate results locally if you want, but it is somewhat time consuming, so if you want you can just [download the pre-run results]([https://cloudstor.aarnet.edu.au/plus/s/7X2fwap7iIvC71O](https://zenodo.org/records/10369362)) and continue...
You can go ahead and generate results locally if you want, but it is somewhat time consuming, so if you want you can just [download the pre-run results](https://zenodo.org/records/10369362) and continue...

## Set up a plotting function

Expand Down Expand Up @@ -241,7 +241,7 @@ GroundTruthDataPath = str(Path(__file__).parent / 'SimpleCollimatorExample_Topas
# to wherever your ground truth results are
```

Remember you can also [download the ground truth results](https://cloudstor.aarnet.edu.au/plus/s/Wm9vndV47u941JU)
Remember you can also [download the ground truth results](https://zenodo.org/records/10369362)

Ok, now we can run `quantify_noise.py`, which will produce the following results:

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