issues Search Results · repo:Illumina/Cyrius language:Python
Filter by
36 results
(53 ms)36 results
inIllumina/Cyrius (press backspace or delete to remove)Hello, I have been able to succesffully run Cyrius on many samples. However, one sample I get the error shown below. Any
thoughts on the cause? PyPGx and Aldy were both able to call this sample as *2x2/*4. ...
anh151
- Opened on Nov 13, 2023
- #41
Hello;
Thank you for developing this tool.
I got a Warning message from my sample:
cyrius -m bam_manifest.txt -g 38 -t 20 -p genome_cyp2d6 -o genome_cyp2d6
INFO:root:Processing sample deduped at 2023-10-29 ...
diegomd90
- 3
- Opened on Oct 30, 2023
- #40
Hello,
I ran !pip install git+https://github.com/Illumina/Cyrius.git in a cell in my jupyter notebook and received the
following output:
Collecting git+https://github.com/Illumina/Cyrius.git Cloning ...
timsanford
- 3
- Opened on Oct 13, 2023
- #39
Hello, I am fairly new to coding and I need some help implementing Cyrius in my project. I am currently trying to
implement Cyrius in the All of Us cloud-based platform, but I am having trouble. All of ...
- 1
- Opened on Aug 11, 2023
- #37
When running Cyrius on 5 wgs CRAM samples (all listed in a manifest text file), I received the following error after
message that the first sample was processing:
Cyrius/depth_calling/snp_count.py:127: ...
- 1
- Opened on Jun 20, 2023
- #36
I run command star_caller.py, and i got this error
INFO:root:Processing sample test at 2023-05-01 11:57:07.119751
Traceback (most recent call last):
File /path/Cyrius/Cyrius-v1.1.1/star_caller.py , ...
PavitaKae
- 2
- Opened on May 1, 2023
- #35
shahed9sHello there,
while testing Cyrius v1.1.1 on CYP2D6-calling on samples from GeT-RM I encountered something unexpected. On a
publication that used Cyrius v1.1, sample NA18565 is correctly genotyped as *10/*36x2 ...
VasilisFlouris
- 1
- Opened on Feb 7, 2023
- #33
I am using the latest version of Cyrius. Initial feedback I want to give is that Cyrius is very easy to install and use.
I really appreciate that. Some tools can be a bear to get setup and running.
I ...
- 4
- Opened on Dec 12, 2022
- #32
Hi, I appreciate for your kind response for the previous issue I submitted last time! :) I do have one more question
about the result in your article.
I am practicing finding rare variants in multi-allelic ...
yebinkim17
- 2
- Opened on Oct 17, 2022
- #31
Learn how you can use GitHub Issues to plan and track your work.
Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub IssuesProTip!
Restrict your search to the title by using the in:title qualifier.Learn how you can use GitHub Issues to plan and track your work.
Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub IssuesProTip!
Press the /
key to activate the search input again and adjust your query.