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@CarlosClassen CarlosClassen released this 10 Jun 15:31
· 2 commits to main since this release
0.2
abd6348

This initial (re-)release introduces CNVand, a snakemake pipeline for CNV analysis using CNVkit and AnnotSV. Key features include:

  • CNV Detection: Perform target and antitarget coverage calculations, generate reference panels, correct systematic biases, segment CNVs, and classify copy number states.
  • CNV Visualization: Generate detailed scatter plots in both PDF and PNG formats to visualize CNV events.
  • CNV Annotation: Annotate structural variants with reference gene annotations using AnnotSV.
  • Docker Support: Run the pipeline in an isolated Docker environment for consistent and reproducible results.
  • Automated Reports: Generate HTML reports that include your results.
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