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@IGVF-UCSD

IGVF-UCSD

A collection of code generated for the IGVF
README.md

Welcome to the UCSD IGVF Award Repository

This is the central code hub for the UCSD's IGVF award team.

Pinned Loading

  1. pipeline_template Public template

    A template repository for code specific to a pipeline

  2. dataset_template Public template

    A template repository for code specific to a dataset

  3. project_template Public template

    A template repository for code specific to a project

Repositories

Showing 9 of 9 repositories
  • multiome-sample-qc Public

    Automated sample QC and processing for RNA/ATAC multiome

    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 9, 2024
  • .github Public
    0 0 0 0 Updated Jul 24, 2024
  • Chiou2021_islet_snATAC-seq Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 21, 2024
  • Augsornworawat2023_sc-islet_10X-Multiome Public

    10x multiome sequencing of 3 independent differentiations of stem-cells to pancreatic islets

    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 13, 2023
  • Zhu2023_sc-islet_scRNA-seq Public

    scRNA-seq to analyze cells during human pluripotent stem cell differentiation into islets at D11, D14, D21, D32, D39.

    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 30, 2023
  • Zhu2023_sc-islet_snATAC-seq Public

    snATAC-seq to analyze cells during human pluripotent stem cell differentiation into islets at D11, D14, D21, D32, D39.

    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 30, 2023
  • dataset_template Public template

    A template repository for code specific to a dataset

    0 MIT 0 0 0 Updated Sep 11, 2023
  • project_template Public template

    A template repository for code specific to a project

    0 MIT 0 0 0 Updated Sep 4, 2023
  • pipeline_template Public template

    A template repository for code specific to a pipeline

    0 MIT 0 0 0 Updated Sep 4, 2023

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