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@nalcala nalcala released this 25 May 07:33
· 20 commits to master since this release
v2.2
267253b
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Learn about vigilant mode.

Added new functionality:

  • added option --filter_readorientation that uses gatk's LearnReadOrientationModel in filtering step (for gatk4)

Minor changes:

  • corrected source for docker container (previously on nalcala instead of IARCbioinfo)
  • debug multi-sample
  • ensures that symlinks to split beds are created (helps running with singularity)
  • correctly set up deploy of dags produced during circleci tests to github
  • change tempdir for sort for smoother use of singularity
  • improved readme with schematic workflow
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