NAMESPACE

# Generated by roxygen2: do not edit by hand

export(pscnseq)
export(pscnseq_mpileup)
export(pscnseq_pscbs)
export(pscnseq_reports)
export(pscnseq_sequenza)
importFrom(PSCBS,getChromosomes)
importFrom(PSCBS,normalizeTotalCNs)
importFrom(PSCBS,report)
importFrom(PSCBS,segmentByPairedPSCBS)
importFrom(R.filesets,fullname)
importFrom(R.filesets,getFullNames)
importFrom(R.filesets,getNames)
importFrom(R.filesets,getPathnames)
importFrom(R.filesets,getTags)
importFrom(R.filesets,readDataFrame)
importFrom(R.filesets,setFullNamesTranslator)
importFrom(R.filesets,sortBy)
importFrom(R.utils,Arguments)
importFrom(R.utils,CmdArgsFunction)
importFrom(R.utils,cat)
importFrom(R.utils,cmdArg)
importFrom(R.utils,commandArgs)
importFrom(R.utils,enter)
importFrom(R.utils,enterf)
importFrom(R.utils,exit)
importFrom(R.utils,hpaste)
importFrom(R.utils,isFile)
importFrom(R.utils,isGzipped)
importFrom(R.utils,less)
importFrom(R.utils,loadObject)
importFrom(R.utils,mprint)
importFrom(R.utils,mprintf)
importFrom(R.utils,mstr)
importFrom(R.utils,printf)
importFrom(R.utils,saveObject)
importFrom(R.utils,seqToHumanReadable)
importFrom(aroma.core,isCompatibleWith)
importFrom(aroma.seq,"directoryStructure<-")
importFrom(aroma.seq,BamDataSet)
importFrom(aroma.seq,FastaReferenceFile)
importFrom(aroma.seq,GcBaseFile)
importFrom(aroma.seq,MPileupFileSet)
importFrom(aroma.seq,SeqzFileSet)
importFrom(aroma.seq,findSamtools)
importFrom(aroma.seq,getSeqNames)
importFrom(aroma.seq,hasIndex)
importFrom(aroma.seq,mpileup)
importFrom(aroma.seq,pileup2seqz)
importFrom(future,"%<-%")
importFrom(future,"%label%")
importFrom(future,resolve)
importFrom(future,sessionDetails)
importFrom(gtools,mixedorder)
importFrom(listenv,listenv)
importFrom(utils,file_test)
importFrom(utils,help)
importFrom(utils,packageVersion)
importFrom(utils,str)
importFrom(yaml,yaml.load_file)