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Dorado models #4

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mattdmem opened this issue Dec 13, 2024 · 4 comments
Open

Dorado models #4

mattdmem opened this issue Dec 13, 2024 · 4 comments
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enhancement New feature or request

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@mattdmem
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mattdmem commented Dec 13, 2024

Hello - are there any plan to release a new version with dorado models?

@aquaskyline
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Need to switch from using Clair-Ensemble to using Clair3. Are you using ClusterV for HIV or some other species?

@mattdmem
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Thanks! yes HIV!

@wangtyi
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wangtyi commented Jan 6, 2025

Hello, we have updated clusterV to use Clair3 now. If you wish to use other models, you can do so by specifying the --clair3_model_path option. For detailed instructions, please refer to the section Changing pre-trained models of Clair3 in the README.

Note: If the --clair3_model_path is not specified, the model will default to '../Clair3/models/ont', which is the r941_prom_hac_g360+g422 model. You can change this to use the latest dorado model. For example, you can download the r1041_e82_400bps_sup_v500_model and pass the path to ClusterV using the --clair3_model_path option.

@aquaskyline aquaskyline added the enhancement New feature or request label Jan 7, 2025
@aquaskyline
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Upgraded to v1.3 (#5).

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