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@HCGB-IGTP

High Content Genomics & Bioinformatics - Germans Trias i Pujol Research Institute

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  1. XICRA XICRA Public

    Small RNAseq pipeline for paired-end reads

    Python 7 3

  2. spaTyper spaTyper Public

    Forked from mjsull/spa_typing

    Computational method for finding spa types.

    Python 7 2

  3. BacterialTyper BacterialTyper Public

    Bacterial identification pipeline

    Python 3

  4. HCGB.IGTP.DAnalysis HCGB.IGTP.DAnalysis Public

    Differential expression/methylation analysis for several platform and techniques

    R 2

  5. islandpath islandpath Public

    Forked from brinkmanlab/islandpath

    IslandPath standalone software

    Perl 1

  6. pyan pyan Public

    Forked from ttylec/pyan

    pyan is a Python module that performs static analysis of Python code to determine a call dependency graph between functions and methods. This is different from running the code and seeing which fun…

    Python 1

Repositories

Showing 10 of 13 repositories
  • HCGB.IGTP.DAnalysis Public

    Differential expression/methylation analysis for several platform and techniques

    R 2 GPL-3.0 0 0 0 Updated Dec 13, 2024
  • draculR.HCGB Public Forked from mxhp75/DraculR

    Public repository for the DraculR Shiny App. used to calculate haemolysis in HTS miRNA sequencing data.

    HTML 0 GPL-3.0 1 0 0 Updated Oct 30, 2024
  • XICRA Public

    Small RNAseq pipeline for paired-end reads

    Python 7 MIT 3 8 0 Updated Oct 18, 2024
  • HCGB_python_functions Public

    useful python functions

    Python 0 0 0 0 Updated Oct 18, 2024
  • wanderer_v2 Public
    Shell 0 0 0 0 Updated Jun 11, 2024
  • XICRA.stats Public

    R package for descriptive statistics of XICRA output results

    HTML 0 GPL-3.0 1 1 0 Updated Jun 11, 2024
  • BacterialTyper Public

    Bacterial identification pipeline

    Python 3 MIT 0 12 3 Updated Apr 3, 2024
  • RNA_seq_pipe Public
    Python 1 1 0 0 Updated Aug 24, 2023
  • HCVgenotool Public

    Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.

    Python 1 GPL-3.0 1 0 0 Updated Oct 7, 2021
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 0 3,428 0 0 Updated May 18, 2021