CLUSTAR

For clustering the RNA/DNA sequences.

This clustering algorithm used in MACF.

How to use?

1. git clone this repo

   $ git clone https://github.com/Guuhua/CLUSTAR.git

2. make

   $ cd CLUSTAR
   $ make

3. run

   $ ./CLUSTAR ./test/rna.fasta ./test/rna.clstr

clean

$ make clean

Format

The input filename is required in fasta format.

The output file looks like: (similar to the cdhit's format)

>Cluster 0
0      1542nt, >_i1
1      1542nt, >_i2
>Cluster 1
0      1537nt, >958935
1      1534nt, >_i1375678
2      1534nt, >_i1895798
3      1534nt, >_i1895799
4      1534nt, >_i1896969
5      1534nt, >_i1900973
6      1535nt, >_i1900974
7      1535nt, >_i1900975
8      1533nt, >_i1902596

License

CLUSTAR is released under the MIT license. See the file LICENSE for more details.

Contact

If you have any problems, please email me.(ttscj12@gmail.com)