Data and R scripts in support of "The immune profile of the gut microbiome in graft versus host disease patients"
Script to compute and display overall evolution across the allo-HSCT procedure of the gut microbiome
Script looking at the upstream immunosuppressive conditioning influence on the gut microbiome, in relation the aGvHD status
Script fitting random survival forests to baseline microbiomes using right-censored survival, the aim being to extract important taxa.
Script to project the results of linear regression analysis.
Script covering the in silico prediction of co-exclusion and co-occurrence between important species and qualified presumption of safety (QPS) species.