fix theta and add to l2 routine

src/halodrops/helper/__init__.py

@@ -235,7 +235,7 @@ def calc_q_from_rh(ds):
     return ds
 
 
-def calc_theta_from_T(dataset):
+def calc_theta_from_T(ds):
     """
     Input :
 
@@ -248,8 +248,13 @@ def calc_theta_from_T(dataset):
     Function to estimate potential temperature from the temperature and pressure in the given dataset.
     """
     theta = mpcalc.potential_temperature(
-        dataset.p.values * units.Pa, dataset.ta.values * units.kelvin
-    ).magnitude
-    ds["theta"] = (ds.ta.dims, theta)
+        ds.p.values * units.Pa, ds.ta.values * units.kelvin
+    )
+    ds["theta"] = (ds.ta.dims, theta.magnitude)
+    ds["theta"].attrs = dict(
+        standard_name="potential temperature",
+        long_name="potential temperature",
+        units=str(theta.units),
+    )
 
     return ds

src/halodrops/pipeline.py

@@ -445,6 +445,7 @@ def run_pipeline(pipeline: dict, config: configparser.ConfigParser):
             "get_l2_filename",
             "add_l2_ds",
             "create_prep_l3",
+            "add_q_and_theta_to_l2_ds",
             "remove_non_mono_incr_alt",
             "interpolate_alt",
             "prepare_l2_for_gridded",

src/halodrops/processor.py

@@ -1073,10 +1073,7 @@ def add_q_and_theta_to_l2_ds(self):
         self : object
             Returns the sonde object with potential temperature and specific humidity added to the L2 dataset.
         """
-        if hasattr(self, "_interim_l3_ds"):
-            ds = self._interim_l3_ds
-        else:
-            ds = self.l2_ds
+        ds = self._prep_l3_ds
 
         ds = hh.calc_q_from_rh(ds)
         ds = hh.calc_theta_from_T(ds)