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pip-packaging-linux.yml
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name: pip packaging linux
on:
release:
types: [published]
jobs:
build:
name: build pip wheel
runs-on: ubuntu-latest
# cf. https://github.com/GUDHI/gudhi-deploy/blob/main/Dockerfile_for_pip
container: gudhi/pip_for_gudhi:2024.12.02
steps:
- uses: actions/checkout@v4
with:
submodules: true
# Python 3.8 specific case where NumPy 2.x will not be supported
# numpy~=1.21.4 means any numpy=1.21.*, but also numpy>=1.21.4 (numpy~=1.21 do not work as it means any numpy==1.*)
- name: Build wheel for Python 3.8
run: |
mkdir build_38
cd build_38
cmake -DCMAKE_BUILD_TYPE=Release -DPython_EXECUTABLE=$PYTHON38/bin/python ..
cd src/python
$PYTHON38/bin/python -m build -n -w
auditwheel repair dist/*.whl
- name: Install and test wheel for Python 3.8
run: |
$PYTHON38/bin/python -m pip install --user pytest build_38/src/python/dist/*.whl
$PYTHON38/bin/python -m pip install numpy --upgrade
$PYTHON38/bin/python -c "import gudhi; print(gudhi.__version__)"
$PYTHON38/bin/python -m pytest -v src/python/test/test_alpha_complex.py
$PYTHON38/bin/python -m pytest -v src/python/test/test_delaunay_complex.py
$PYTHON38/bin/python -m pytest -v src/python/test/test_bottleneck_distance.py
$PYTHON38/bin/python -m pytest -v src/python/test/test_cubical_complex.py
$PYTHON38/bin/python -m pytest -v src/python/test/test_rips_complex.py
- name: Build wheel for Python 3.9
run: |
mkdir build_39
cd build_39
cmake -DCMAKE_BUILD_TYPE=Release -DPython_EXECUTABLE=$PYTHON39/bin/python ..
cd src/python
$PYTHON39/bin/python -m build -n -w
auditwheel repair dist/*.whl
# For python >=3.9, numpy >= 2.0 is used to package and test ABI compatibility with numpy 1.X
# cf. https://numpy.org/doc/stable/dev/depending_on_numpy.html#numpy-2-0-specific-advice
# gudhi requires numpy >= 1.15.0, but minimal numpy version for python 3.9 is 1.19.3 for instance
# numpy~=1.19.3 means any numpy=1.19.*, but also numpy>=1.19.3 (numpy~=1.19 do not work as it means any numpy==1.*)
- name: Install and test wheel for Python 3.9
run: |
$PYTHON39/bin/python -m pip install --user pytest build_39/src/python/dist/*.whl
$PYTHON39/bin/python -m pip install numpy~=1.19.3
$PYTHON39/bin/python -c "import gudhi; print(gudhi.__version__)"
$PYTHON39/bin/python -m pytest -v src/python/test/test_alpha_complex.py
$PYTHON39/bin/python -m pytest -v src/python/test/test_delaunay_complex.py
$PYTHON39/bin/python -m pytest -v src/python/test/test_bottleneck_distance.py
$PYTHON39/bin/python -m pytest -v src/python/test/test_cubical_complex.py
$PYTHON39/bin/python -m pytest -v src/python/test/test_rips_complex.py
- name: Build wheel for Python 3.10
run: |
mkdir build_310
cd build_310
cmake -DCMAKE_BUILD_TYPE=Release -DPython_EXECUTABLE=$PYTHON310/bin/python ..
cd src/python
$PYTHON310/bin/python -m build -n -w
auditwheel repair dist/*.whl
- name: Install and test wheel for Python 3.10
run: |
$PYTHON310/bin/python -m pip install --user pytest build_310/src/python/dist/*.whl
$PYTHON310/bin/python -m pip install numpy~=1.21.6
$PYTHON310/bin/python -c "import gudhi; print(gudhi.__version__)"
$PYTHON310/bin/python -m pytest -v src/python/test/test_alpha_complex.py
$PYTHON310/bin/python -m pytest -v src/python/test/test_delaunay_complex.py
$PYTHON310/bin/python -m pytest -v src/python/test/test_bottleneck_distance.py
$PYTHON310/bin/python -m pytest -v src/python/test/test_cubical_complex.py
$PYTHON310/bin/python -m pytest -v src/python/test/test_rips_complex.py
- name: Build wheel for Python 3.11
run: |
mkdir build_311
cd build_311
cmake -DCMAKE_BUILD_TYPE=Release -DPython_EXECUTABLE=$PYTHON311/bin/python ..
cd src/python
$PYTHON311/bin/python -m build -n -w
auditwheel repair dist/*.whl
- name: Install and test wheel for Python 3.11
run: |
$PYTHON311/bin/python -m pip install --user pytest build_311/src/python/dist/*.whl
$PYTHON311/bin/python -m pip install numpy~=1.23.2
$PYTHON311/bin/python -c "import gudhi; print(gudhi.__version__)"
$PYTHON311/bin/python -m pytest -v src/python/test/test_alpha_complex.py
$PYTHON311/bin/python -m pytest -v src/python/test/test_delaunay_complex.py
$PYTHON311/bin/python -m pytest -v src/python/test/test_bottleneck_distance.py
$PYTHON311/bin/python -m pytest -v src/python/test/test_cubical_complex.py
$PYTHON311/bin/python -m pytest -v src/python/test/test_rips_complex.py
- name: Build wheel for Python 3.12
run: |
mkdir build_312
cd build_312
cmake -DCMAKE_BUILD_TYPE=Release -DPython_EXECUTABLE=$PYTHON312/bin/python ..
cd src/python
$PYTHON312/bin/python -m build -n -w
auditwheel repair dist/*.whl
- name: Install and test wheel for Python 3.12
run: |
$PYTHON312/bin/python -m pip install --user pytest build_312/src/python/dist/*.whl
$PYTHON312/bin/python -m pip install numpy~=1.26.0
$PYTHON312/bin/python -c "import gudhi; print(gudhi.__version__)"
$PYTHON312/bin/python -m pytest -v src/python/test/test_alpha_complex.py
$PYTHON312/bin/python -m pytest -v src/python/test/test_delaunay_complex.py
$PYTHON312/bin/python -m pytest -v src/python/test/test_bottleneck_distance.py
$PYTHON312/bin/python -m pytest -v src/python/test/test_cubical_complex.py
$PYTHON312/bin/python -m pytest -v src/python/test/test_rips_complex.py
- name: Build wheel for Python 3.13
run: |
mkdir build_313
cd build_313
cmake -DCMAKE_BUILD_TYPE=Release -DPython_EXECUTABLE=$PYTHON313/bin/python ..
cd src/python
$PYTHON313/bin/python -m build -n -w
auditwheel repair dist/*.whl
- name: Install and test wheel for Python 3.13
run: |
$PYTHON313/bin/python -m pip install --user pytest build_313/src/python/dist/*.whl
$PYTHON313/bin/python -m pip install numpy~=1.26.0
$PYTHON313/bin/python -c "import gudhi; print(gudhi.__version__)"
$PYTHON313/bin/python -m pytest -v src/python/test/test_alpha_complex.py
$PYTHON313/bin/python -m pytest -v src/python/test/test_delaunay_complex.py
$PYTHON313/bin/python -m pytest -v src/python/test/test_bottleneck_distance.py
$PYTHON313/bin/python -m pytest -v src/python/test/test_cubical_complex.py
$PYTHON313/bin/python -m pytest -v src/python/test/test_rips_complex.py
- name: Publish on PyPi
env:
TWINE_USERNAME: __token__
TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
run: |
$PYTHON38/bin/python -m twine upload build_38/src/python/wheelhouse/*.whl
$PYTHON38/bin/python -m twine upload build_39/src/python/wheelhouse/*.whl
$PYTHON38/bin/python -m twine upload build_310/src/python/wheelhouse/*.whl
$PYTHON38/bin/python -m twine upload build_311/src/python/wheelhouse/*.whl
$PYTHON38/bin/python -m twine upload build_312/src/python/wheelhouse/*.whl
$PYTHON38/bin/python -m twine upload build_313/src/python/wheelhouse/*.whl