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Different taxonomy level aggregration and extracting full taxonomic classification. #279

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microb123 opened this issue Aug 20, 2024 · 0 comments
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I tried to aggregate the taxa using the argument "tax_level" from ANCOMBC but other taxonomic levels are included. For instance, when I aggregate taxa at the "genus" level there were couples of the family included. I tried with both tse object and the phyloseq object but the issue is the same. When I tried with "aggregate_taxa" function from the microbiome r package there weren't any families included but it gave a different result.

Screenshot 2024-08-13 at 12 58 25 AM

Also, how can we extract full taxonomic classifications? I tried with tse object as suggested in #147 but it didn't work.

@Maggie8888 Maggie8888 added the bug Something isn't working label Sep 27, 2024
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