wine update and vitamin fix

-deprecated some vitamin terms and replaced with CDNO hierarchy, CHEBI re-import. - removed use of NCIT Vitamin. - wine biohackathon maceration terms, pomace, must, some preliminary appellation terms.
FoodOntology · Nov 17, 2021 · de5407c · de5407c
1 parent 7bef5fb
commit de5407c
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Showing 21 changed files with 9,907 additions and 2,633 deletions.
diff --git a/foodon.owl b/foodon.owl
diff --git a/foodon_core.owl b/foodon_core.owl
diff --git a/imports/chebi_import.owl b/imports/chebi_import.owl
diff --git a/imports/deprecation_import.owl b/imports/deprecation_import.owl
@@ -21928,6 +21928,16 @@ For industrial processing, e.g. in the process inactivation of enzymatic activit
         <rdfs:label xml:lang="en">obsolete: leaf celery plant</rdfs:label>
         <obo:IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_941588"/>
     </rdf:Description>
+    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FOODON_03413761">
+        <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+        <rdfs:label xml:lang="en">obsolete: vitamin b12</rdfs:label>
+        <obo:IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/CHEBI_176843"/>
+    </rdf:Description>
+    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FOODON_03413763">
+        <obo:IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/CHEBI_176783"/>
+        <rdfs:label xml:lang="en">obsolete: vitamin C</rdfs:label>
+        <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+    </rdf:Description>
     <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FOODON_03414174">
         <obo:IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_91752"/>
         <rdfs:label xml:lang="en">obsolete: monkeyhead mushroom</rdfs:label>
@@ -21971,13 +21981,18 @@ For industrial processing, e.g. in the process inactivation of enzymatic activit
     <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FOODON_03420289">
         <obo:IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/PO_0000055"/>
         <rdfs:label xml:lang="en">obsolete: bud</rdfs:label>
-        <obo:IAO_0000115 xml:lang="en">A small swelling or projection on a plant, from which a shoot, cluster of leaves, or flower develops (Source: Webster&apos;s)</obo:IAO_0000115>
         <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+        <obo:IAO_0000115 xml:lang="en">A small swelling or projection on a plant, from which a shoot, cluster of leaves, or flower develops (Source: Webster&apos;s)</obo:IAO_0000115>
     </rdf:Description>
     <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FOODON_03420310">
         <obo:IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/PO_0009029"/>
         <rdfs:label xml:lang="en">obsolete: stamen</rdfs:label>
     </rdf:Description>
+    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FOODON_03460216">
+        <rdfs:label xml:lang="en">obsolete: vitamin B</rdfs:label>
+        <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
+        <obo:IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/CHEBI_75769"/>
+    </rdf:Description>
 </rdf:RDF>
 
 

diff --git a/imports/foodon_product_import.owl b/imports/foodon_product_import.owl
diff --git a/imports/general_import.owl b/imports/general_import.owl
diff --git a/imports/ncbitaxon_import.owl b/imports/ncbitaxon_import.owl
@@ -25,13 +25,17 @@
 
     <!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
 
-    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
+    <!-- <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
+        <rdfs:label xml:lang="en">imported from</rdfs:label>
+    </owl:AnnotationProperty> -->
 
 
 
     <!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+    <!-- <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_exact_synonym</rdfs:label>
+    </owl:AnnotationProperty> -->
 
 
 
@@ -22058,6 +22062,16 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/NCBITaxon_313200 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_313200">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_46145"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Claytonia lanceolata</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/NCBITaxon_313238 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_313238">
@@ -34210,10 +34224,21 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/NCBITaxon_46145 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_46145">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_703407"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
+        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">springbeauties</oboInOwl:hasExactSynonym>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Claytonia</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/NCBITaxon_46146 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_46146">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_703407"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_46145"/>
         <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ncbitaxon.owl"/>
         <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">miner&apos;s lettuce</oboInOwl:hasExactSynonym>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Claytonia perfoliata</rdfs:label>
@@ -55010,5 +55035,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->
 
diff --git a/imports/robot_plant_parts.owl b/imports/robot_plant_parts.owl
@@ -294,7 +294,7 @@
         <owl:equivalentClass>
             <owl:Class>
                 <owl:intersectionOf rdf:parseType="Collection">
-                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PO_0030110"/>
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FOODON_00002473"/>
                     <owl:Restriction>
                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
                         <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FOODON_00002559"/>
@@ -630,7 +630,7 @@
         <owl:equivalentClass>
             <owl:Class>
                 <owl:intersectionOf rdf:parseType="Collection">
-                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PO_0030110"/>
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FOODON_00002473"/>
                     <owl:Restriction>
                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
                         <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FOODON_00002852"/>
@@ -659,7 +659,7 @@
         <owl:equivalentClass>
             <owl:Class>
                 <owl:intersectionOf rdf:parseType="Collection">
-                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PO_0030110"/>
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/FOODON_00002473"/>
                     <owl:Restriction>
                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001000"/>
                         <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FOODON_00002861"/>
@@ -5931,31 +5931,12 @@
     <!-- http://purl.obolibrary.org/obo/FOODON_00003638 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/FOODON_00003638">
-        <owl:equivalentClass>
-            <owl:Class>
-                <owl:intersectionOf rdf:parseType="Collection">
-                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000027"/>
-                    <owl:Restriction>
-                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
-                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FOODON_03311126"/>
-                    </owl:Restriction>
-                    <owl:Restriction>
-                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
-                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FOODON_00003417"/>
-                    </owl:Restriction>
-                    <owl:Restriction>
-                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
-                        <owl:allValuesFrom rdf:resource="http://purl.obolibrary.org/obo/FOODON_00003417"/>
-                    </owl:Restriction>
-                </owl:intersectionOf>
-            </owl:Class>
-        </owl:equivalentClass>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FOODON_00001170"/>
         <obo:IAO_0000115 xml:lang="en">A bunch of grapes.</obo:IAO_0000115>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FoodOn</obo:IAO_0000119>
         <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2021-02-11T02:03:25</dc:date>
         <oboInOwl:hasExactSynonym xml:lang="en">grapes on the vine</oboInOwl:hasExactSynonym>
-        <rdfs:label xml:lang="en">grape bunch</rdfs:label>
+        <rdfs:label xml:lang="en">grape cluster</rdfs:label>
     </owl:Class>
 
 
@@ -6294,7 +6275,7 @@
         <obo:IAO_0000115 xml:lang="en">A pome fruit from a crab apple tree.</obo:IAO_0000115>
         <obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://en.wikipedia.org/wiki/Malus</obo:IAO_0000119>
         <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2021-02-11T02:41:10</dc:date>
-        <rdfs:label xml:lang="en">crab apple (whole)</rdfs:label>
+        <rdfs:label xml:lang="en">crabapple (whole)</rdfs:label>
     </owl:Class>
 
 
@@ -16419,5 +16400,5 @@
 
 
 
-<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi -->