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cohort_constants.txt
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{
"tcga": {
"file_structure": "single"
},
"cbioportal": {
"file_structure": "single"
},
"depmap": {
"file_structure": "single"
},
"gdc": {
"file_structure": "single"
},
"immport": {
"file_structure": "single"
},
"lincs": {
"file_structure": "single"
},
"cptac": {
"file_structure": "single"
},
"valo": {
"file_structure": "single"
},
"tcga_raw_counts": {
"file_structure": "single"
},
"geo": {
"file_structure": "multiple"
},
"metabolomics": {
"file_structure": "multiple"
},
"pcd": {
"file_structure": "multiple"
},
"enterprise_atlas": {
"file_structure": "multiple"
},
"ngj": {
"file_structure": "multiple"
},
"demo_oa_2": {
"file_structure": "hybrid"
},
"owkin_france_clinical_oa": {
"file_structure": "hybrid"
},
"owkin_france_cellline_oa": {
"file_structure": "single"
},
"etx": {
"file_structure": "multiple"
},
"trex_bio": {
"file_structure": "multiple"
},
"sonata_tx": {
"file_structure": "multiple"
},
"gates_geo_transcriptomics": {
"file_structure": "multiple"
},
"prologue_bulk_omixatlas": {
"file_structure": "multiple"
}
}