Merge pull request #18 from EcoJulia/rr/workflows

.github/workflows/CompatHelper.yml

@@ -1,19 +1,40 @@
 name: CompatHelper
 
 on:
+  push:
+    branches:
+      - main
   schedule:
-    - cron: '00 00 * * *'
+    - cron: '0 4 * * *'  # Daily at 4 AM
 
 jobs:
   CompatHelper:
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        julia-version:
+          - '1'
+        arch:
+          - x86
+        os:
+          - ubuntu-latest
     steps:
       - uses: julia-actions/setup-julia@latest
         with:
-          version: 1.3
-      - name: Pkg.add("CompatHelper")
-        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
-      - name: CompatHelper.main()
+          version: ${{ matrix.julia-version }}
+          arch: ${{ matrix.arch }}
+      - name: "Install CompatHelper"
+        run: |
+          import Pkg
+          name = "CompatHelper"
+          uuid = "aa819f21-2bde-4658-8897-bab36330d9b7"
+          version = "2"
+          Pkg.add(; name, uuid, version)
+        shell: julia --color=yes {0}
+      - name: "Run CompatHelper"
+        run: |
+          import CompatHelper
+          CompatHelper.main()
+        shell: julia --color=yes {0}
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/TagBot.yml

@@ -1,9 +1,13 @@
 name: TagBot
 on:
-  schedule:
-    - cron: 0 * * * *
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+
 jobs:
   TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
     runs-on: ubuntu-latest
     steps:
       - uses: JuliaRegistries/TagBot@v1

.github/workflows/nightly.yml

@@ -0,0 +1,27 @@
+name: JuliaNightly
+# Nightly Scheduled Julia Nightly Run
+on:
+  push:
+    branches:
+      - main
+    tags:
+      - 'v*'
+  schedule:
+    - cron: '0 2 * * 0'  # Weekly at 2 AM UTC Sunday
+
+jobs:
+  test:
+    name: Julia Nightly - Ubuntu - x64
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v2
+      - name: Set up julia
+        uses: julia-actions/setup-julia@v1
+        with:
+          version: nightly
+          arch: x64
+      - name: Build package
+        uses: julia-actions/julia-buildpkg@latest
+      - name: Run tests
+        uses: julia-actions/julia-runtest@latest

.github/workflows/testing.yml

@@ -0,0 +1,50 @@
+name: CI
+
+on:
+  push:
+    branches:
+      - main
+    tags:
+      - 'v*'
+  pull_request:
+
+jobs:
+  EcoBase-tests:
+    runs-on: ${{ matrix.os }}
+    continue-on-error: ${{ matrix.experimental }}
+    strategy:
+      matrix:
+        julia-version:
+          - '1'
+        os:
+          - ubuntu-latest
+          - macOS-latest
+          - windows-latest
+        R-version:
+          - 'release'
+        arch:
+          - x64
+        experimental:
+          - false
+      fail-fast: false
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v2
+    - name: Set up julia
+      uses: julia-actions/setup-julia@v1
+      with:
+        version: ${{ matrix.julia-version }}
+        arch: ${{ matrix.arch }}
+    - name: Build package
+      uses: julia-actions/julia-buildpkg@master
+    - name: Running
+      uses: julia-actions/julia-runtest@master
+    - name: Process coverage
+      uses: julia-actions/julia-processcoverage@v1
+    - name: Coveralls
+      uses: coverallsapp/github-action@master
+      with:
+        github-token: ${{ secrets.GITHUB_TOKEN }}
+        path-to-lcov: ./lcov.info
+    - name: Codecov
+      uses: codecov/codecov-action@v1

.zenodo.json

@@ -0,0 +1,30 @@
+{
+    "title": "EcoBase.jl - A package implementing an abstract interface to data types used in ecological analyses",
+    "description": "This package implements an abstract interface to data types used in ecological analyses in Julia",
+    "upload_type": "software",
+    "creators": [
+        {
+            "affiliation": "GLOBE Institute, University of Copenhagen",
+            "name": "Borregaard, Michael Krabbe",
+            "orcid": "0000-0002-8146-8435"
+        },
+        {
+            "affiliation": "University of Glasgow",
+            "name": "Reeve, Richard",
+            "orcid": "0000-0003-2589-8091"
+        }
+    ],
+    "access_right": "open",
+    "license": "mit-license",
+    "related_identifiers": [
+        {
+            "scheme": "url",
+            "identifier": "https://github.com/EcoJulia/EcoBase.jl",
+            "relation": "isIdenticalTo"
+        }
+    ],
+    "keywords": [
+        "julia",
+        "ecology"
+    ]
+}

LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2018-2021: Michael K. Borregaard, Richard Reeve and EcoJulia
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

NEWS.md

@@ -0,0 +1,17 @@
+# NEWS
+
+- v0.1.4
+  - Improve printing
+  - Update GitHub workflows
+  - Add Zenodo metadata
+  - Fix testing and coverage checking to use GitHub workflows
+- v0.1.3
+  - CompatHelper fixes
+- v0.1.2
+  - CompatHelper fixes
+  - Add TagBot
+- v0.1.1
+  - Bugfix for asindices()
+- v0.1.0
+  - Add CompatHelper
+  - Move to Project.toml

Project.toml

@@ -3,8 +3,8 @@ uuid = "a58aae7d-b440-5a11-b283-399458f99aac"
 keywords = ["macroecology", "ecology", "biology", "geography"]
 license = "MIT"
 desc = "Base package with abstract types for ecology"
-authors = ["mkborregaard <mkborregaard@sund.ku.dk", "RichardReeve <Richard.Reeve@glasgow.ac.uk>"]
-version = "0.1.3"
+authors = ["mkborregaard <mkborregaard@sund.ku.dk", "Richard Reeve <Richard.Reeve@glasgow.ac.uk>", "Kevin Bonham <kbonham@wellesley.edu>"]
+version = "0.1.4"
 
 [deps]
 RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"