DESCRIPTION

Package: DEWSeq
Type: Package
Title: Differential Expressed Windows Based on Negative Binomial Distribution
Version: 1.17.1
Authors@R:
    c(person("Sudeep","Sahadevan",email= "sahadeva@embl.de",role="aut"), 
    person("Thomas","Schwarzl",email="schwarzl@embl.de",role="aut"),
    person("bioinformatics team","Hentze",email="biohentze@embl.de",role=c("aut","cre")))
Description: DEWSeq is a sliding window approach for the analysis of
    differentially enriched binding regions eCLIP or iCLIP next generation
    sequencing data.
Imports:
    BiocGenerics,
    data.table(>= 1.11.8),
    GenomeInfoDb,
    GenomicRanges,
    methods,
    S4Vectors,
    SummarizedExperiment,
    stats,
    utils
Depends:
    R(>= 4.0.0),
    R.utils,
    DESeq2,
    BiocParallel
Suggests:
    knitr,  
    rmarkdown,
    testthat,
    BiocStyle,
    IHW
VignetteBuilder:
    knitr
biocViews: Sequencing,
    GeneRegulation,
    FunctionalGenomics,
    DifferentialExpression
License: LGPL (>= 3)
URL: https://github.com/EMBL-Hentze-group/DEWSeq/
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.1.2
BugReports: https://github.com/EMBL-Hentze-group/DEWSeq/issues