diff --git a/README.md b/README.md index c53d1f6..e2f9ca9 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,4 @@ -2023/03/01 -Hsiang-He Lee (lee1061@llnl.gov) - -E3SM chemistry diagnostic package version1.0 (ChemDyg v1.0) is designed for E3SM chemistry development. There are total 11 types of plot and 3 types of table for model-to-model and model-to-observation comparison. +E3SM chemistry diagnostic package (ChemDyg) is designed for E3SM chemistry development. There are total 11 types of plot and 3 types of table for model-to-model and model-to-observation comparison. Index page and example figures: https://web.lcrc.anl.gov/public/e3sm/diagnostic_output/ac.lee1061/20220914.PAN.MZThet.v2.LR.bi-grid.amip.chemUCI_Linozv3/e3sm_chem_diags/plots/ @@ -9,19 +6,12 @@ https://web.lcrc.anl.gov/public/e3sm/diagnostic_output/ac.lee1061/20220914.PAN.M ChemDyg is executed by zppy, which is a post-processing toolchain for E3SM written in Python (https://github.com/E3SM-Project/zppy). *How to run ChemDyg via zppy script on chrysalis? -1. Setup environment ->source /gpfs/fs1/soft/chrysalis/manual/anaconda3/2020.11/etc/profile.d/conda.sh ->conda activate zppy_dev_chem - -2. Download zppy and ChemDyg on your working folder - -3. Modify .cfg run script and then ->zppy -c ChemDyg_example_script.cfg - - -** Additional python script "DEBUG_chem_diags_timestep.py" is designed for debug purpose. The user gives the path of E3SM .h0 and .h1 outputs and other necessary information. The script will generate chem tendency table for each timestep. - -See [documentation](https://e3sm-project.github.io/zppy) for more details. +``` +source /lcrc/soft/climate/e3sm-unified/load_latest_e3sm_unified_chrysalis.sh +wget https://raw.githubusercontent.com/E3SM-Project/ChemDyg/main/ChemDyg_example_script.cfg +zppy -c ChemDyg_example_script.cfg +``` +**Note that the users need to change the'e3sm_unified' path on different zppy-supported machines (https://e3sm-project.github.io/zppy/_build/html/main/getting_started.html#activate-e3sm-unified-environment). ## License