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Development for v7.1.0#351

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dschlaep merged 156 commits intomasterDrylandEcology/SOILWAT2:masterfrom release/devel_v7.1.0DrylandEcology/SOILWAT2:release/devel_v7.1.0Copy head branch name to clipboardAug 4, 2023

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Commits on Mar 19, 2023

• New comprehensive SW struct + includes VegProd

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Commits on Mar 21, 2023

• Comprehensive struct gains SW_WEATHER

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Commits on Mar 25, 2023

• Removed function SW_OutputPrefix()

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• All (mock)output functions gain umbrella struct

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Commits on Apr 2, 2023

• New file SW_datastructs.h

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• Purged unnecessary #includes

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• Fixed dynamic call definitions for rSOILWAT2/STEPWAT2

  

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• Removed unused parameter warnings

  

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Commits on Apr 3, 2023

• Comprehensive struct gains SW_SOILWAT

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Commits on Apr 9, 2023

• Removed unnecessary parameters of types within SW_ALL

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• Updated function parameter documentation

  

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Commits on Apr 15, 2023

• Removed excessive SoilWater memory freeing

  

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Commits on Apr 22, 2023

• Comprehensive struct gains SW_MODEL

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Commits on Apr 23, 2023

• Comprehensive struct gains SW_SITE

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Commits on Apr 30, 2023

• Comprehensive struct gains SW_VEGESTAB

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Commits on May 1, 2023

• Fix argument order of SW_VES_read2()

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Commits on May 7, 2023

• Catch-up on function documentation

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Commits on May 8, 2023

• Comprehensive struct gains SW_SKY

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• Add missed parameter documentation for SW_CBN_read()

  

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• Comprehensive struct gains SW_CARBON

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• soil_temperature() loses argument "oldavgLyrTemp"

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• Remove SWC and drainage from copying arrays <-> records in flow module

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• Remove soil temperature from copying arrays <-> records in flow module

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• Eliminate static two-day surfaceAvg and replace with SW_Weather->surfaceAvg

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• Fix debug statement of SW_OUT_write_today()

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• Remove hydraulic redistribution from copying arrays <-> records in flow module

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• Remove transpiration from copying arrays <-> records in flow module

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• Clarify bare-soil evaporation variables

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• Finalize elimination of arrays2records()

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• Fix updated interface of SW_WaterBalance_Checks()

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Commits on May 10, 2023

• Fix SW_SWC_end_day() and soil_temperature() documenation

  

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Commits on May 11, 2023

• Merge pull request #350 from DrylandEcology/simplify_arrays_in_flow

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Commits on May 12, 2023

• Comprehensive struct gains ST_RGR_VALUES

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• Comprehensive struct gains SW_FILE_STATUS

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Commits on May 15, 2023

• Comprehensive struct gains SW_MARKOV

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Commits on May 22, 2023

• New output struct + comprehensive struct gains SW_OUTPUT

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Commits on May 23, 2023

• Struct conversion clean up

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• .gitignore gains VS Code folder (.vscode/)

  

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Commits on May 24, 2023

• Convert MyFileName from global to local scope

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• Misc. static conversion (_notime, temp_snow, _prev*)

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• Comprehensive struct gains new SW_FLOW_LIB_VALUES

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Commits on May 25, 2023

• Convert local snow static variables to constants

  

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• SW_SOILWAT gains global water storage (from SW_Flow.c)

  

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Commits on May 30, 2023

• New struct which comprehensive struct gains - SW_ATMD

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• Times.c loses global static variables

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Commits on May 31, 2023

• Deleted struct SW_FLOW_LIB_VALUES

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Commits on Jun 2, 2023

• generic.h conv. part 1 - new struct, QuietMode & logged

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• generic.h conv. part 2 - errstr & spread LOG_INFO

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• Remove global inbuf

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Commits on Jun 3, 2023

• New struct PATH_INFO Part 1 - remove globals

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• New struct PATH_INFO Part 2 - remove init()

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• Remove globals bFlush_output & useTimeStep

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• Convert UpNeigh_* to local arrays in SW_Water_Flow()

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• Convert global _Sep + remove OUTSEP in outsetup.in

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• New struct SW_GEN_OUT

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• SW_Site.c loses non-constant globals

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• Remove markov_rng as a global

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Commits on Jun 4, 2023

• Output_outarray loses globals Part 1 - SW_GEN_OUT gains vars.

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• Output_outarray loses globals Part 2 - iOUT(2)

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• Output_outtext loses globals (i.e., print_IterationSummary, etc.)

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• SW_GEN_OUT gains STEPWAT2 globals from SW_Output.c

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• Make DirName() thread-safe

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• Fix SW_OUT_write_today() & SW_OUT_SetMemoryRefs()

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• Catch-up func. documentation + remove test print statement

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• Remove "module-level" from descriptions of converted vars

  

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• Fix soil_temperature() prototype in header file

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• Clean unnecessary "// Externs ..." comments

  

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• Fix get_outvalleader() calls

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• SW_Output.h loses globals that have been converted

  

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• SW_OUT_deconstruct() gains SW_GEN_OUT and SW_OUTPUT

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Commits on Jun 5, 2023

• Convert STEPWAT2 globals

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• Fix memory leaks in tests

  

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• create_test_soillayers() gains SW_VEGPROD and SW_SITE

  

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• Remove "defined in SW_Main_lib.c" comment for logfp and logged

  

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Commits on Jun 6, 2023

• Fix test failures attempt 1

  

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Commits on Jun 7, 2023

• Remove SW_F_name()

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• Remove SW_WeatherPrefix()

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• Test globals have a more consistent position

  

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• Fix test failures attempt 2

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• Undo test global file name placement (fix tests attempt 3)

  

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• Prevent future STEPWAT2 warnings within SW_OUT_write_today()

  

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Commits on Jun 8, 2023

• SW_Flow.c loses globals part 1 - conversion/lose SW_LAYER_INFO

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• SW_Flow.c loses globals part 2 - remove records2arrays()

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• SW_Flow.c loses globals part 3 - remove site deconstruct functions

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• SW_Flow.c loses globals part 4 - remove _newlayer()

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Commits on Jun 9, 2023

• r/STEPWAT only variables output vars regain not being defined in SOILWAT

  

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• create_test_soillayers() gains parameter of LOG_INFO

  

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• Prepare NEWS for development of v7.1.0

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Commits on Jun 11, 2023

• Merge branch 'release/devel_v7.0.0' into feature_reentrancy_threadsafety

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• Correct defines for variables not used in SOILWAT2

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• Fix declaration of variables used in SOILWAT2 within SW_GEN_OUT

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• Tests now use Google Test Fixtures

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• Move any parameter of type LOG_INFO to be last in prototypes

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• Compact SW_ST_setup_run() parameters that deal with SW_SITE

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Commits on Jun 12, 2023

• Add explanation block to variables swrcp & my_transp_rgn

  

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• Fix percolation* sizes in SW_WaterBalance_Checks()

  

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• Merge branch 'release/devel_v7.1.0' into feature_reentrancy_threadsafety

  

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• Improve test names to include fitting "test suite" names

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• Clean the rest of "reset SOILWAT2" comments in tests

  

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Commits on Jun 13, 2023

• Simplify the setting of SW_Site->deep_lyr in add_deepdrain_layer()

  

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• New tests to check runs with one and max number of soil layers

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Commits on Jun 14, 2023

• Fix test "AllTest, WaterBalanceWithMaxSoilLayers"

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• Make "AllTest, WaterBalanceWithOneSoilLayer" consistent

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• Deep drainage is now percolation from deepest soil layer

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Commits on Jun 16, 2023

• Fix STEPWAT2 in SOILWAT2 Part 1 - Move SW_datastructs.h types to SW_Defines.h

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• Fix STEPWAT2 in SOILWAT2 Part 2 - fix setGlobalSTEPWAT2_OutputVariables()

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• Fix STEPWAT2 in SOILWAT2 Part 3 - fix SW_Output_outarray.c includes

  

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• Fix STEPWAT2 in SOILWAT2 Part 4 - fix format_IterationSummary2()

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• Fix STEPWAT2 in SOILWAT2 Part 5 - fix SW_OUT_create_*_files()

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• Fix STEPWAT2 in SOILWAT2 Part 6 - silence compiler about unused variables

  

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• Fix STEPWAT2 in SOILWAT2 Part 6 - fix _create_csv_file_ST()

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• Fix STEPWAT2 Part 8 - _set_SXWrequests(_helper)() & has_OutPeriod_inUse2()

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• Fix STEPWAT2 Part 9 - SW_OUT_construct() uses type SW_OUTPUT_POINTERS

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Commits on Jun 17, 2023

• Fix STEPWAT2 Part 10 - SW_OUT_close_files() properly uses SW_GEN_OUT

  

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• Remove EchoInits in SW_VES_read2()

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• Fix STEPWAT2 (/rSOLWAT2) Part 11 - fix iOUT() arguments & parameters

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Commits on Jun 18, 2023

• Fix STEPWAT2 (/rSOLWAT2) Part 12 - misc. fix in SW_Output_get_functions.c

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Commits on Jun 20, 2023

• SW_F_construct() makes a local copy of firstfile

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• Remove SW_datastructs.h dependency on STEPWAT2 headers

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• Misc. changes - SW_F_construct(), SW_Output_get_functions.c & tests close log file

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Commits on Jun 21, 2023

• Re-extern the global ncol_TimeOUT

  

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• Fix rSOILWAT2 in SOILWAT2 Part 1 - correct get_outvalleader()

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• Fix rSOILWAT2 in SOILWAT2 Part 2 - misc. changes to SW_Output.c

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• Fix rSOILWAT2 Part 3 - correct logfp accessing in filefuncs.c

  

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• Fix STEPWAT2/rSOILWAT2 segmentation faults attempt 1

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Commits on Jun 22, 2023

• Remove pointers within SW_GEN_OUT (STEPWAT2 side)

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Commits on Jun 26, 2023

• Correct the setting of tOffset in SW_GEN_OUT

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• Update used_OUTNPERIODS in SW_OUT_set_SXWrequests()

  

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• Correct calls to write_headers_to_csv()

  

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Commits on Jun 27, 2023

• Initialize average layer temperature to zero in soil_temperature()

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• Improve SOILWAT2 tools (#352)

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• Tests now use DFLT_FIRSTFILE instead of a local variable

  

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• Clean up iOUT(2)() lines of code in SW_Output_get_functions.c

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• Merge branch 'release/devel_v7.1.0' into feature_reentrancy_threadsafety

  

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• Fix initialization of avg. layer temp. in soil_temperature()

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Commits on Jun 30, 2023

• Feature soil temperature initialization (#354)

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• Move LOG_INFO arguments to last position (Part 2)

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• Fix rSOILWAT2's calls to iOUT()

  

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Commits on Jul 7, 2023

• Correct LogError() call in SWRC_PTF_estimate_parameters()

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• Update death test fixtures

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Commits on Jul 14, 2023

• Update googletests to use C++14

  

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• Remove note from variable p_OUT in SW_GEN_OUT

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• Fix: "Freed pointer was not allocated error"

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• Fix memory leak in test "VegProdConstructor"

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• SW_SIT_init_run() does not need argument PATH_INFO *PathInfo

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• Improve tool "check_SOILWAT2.sh": added step to run leaks command

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• Reorganize tests

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• Merge pull request #358 from DrylandEcology/feature_memoryfixes

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• Remove n_layers from iOUT() call

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• Update doxygen description of irow_OUT for get_outvalleader()

  

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Commits on Jul 23, 2023

• Added comment on tempstr in SW_OUT_write_today()

  

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Commits on Jul 28, 2023

• Update NEWS.md to explain version 7.1.0

  

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• Merge pull request #349 from DrylandEcology/feature_reentrancy_threadsafety

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• Update googletest to v1.14.0

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• Finalize for release v7.1.0

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• Remove unnecessary InFiles parameters

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